chr20GGceu {GGdata} | R Documentation |
representations of HapMap snp data + expression data
data(chr20GGceuRMA)
These instances of class racExSet
are
created from two basic sources.
First, the expression data for 58 unrelated CEPH founders were obtained from GEO, and RMA was run on the associated CEL files.
Second, data on forward non-redundant SNPs in 48 individuals among the 58 mentioned above were obtained from the HapMap ftp site in late July 2006. Full provenance information still to be supplied.
instances of class racExSet
Vince Carey <stvjc@channing.harvard.edu>
Cheung VG., Spielman RS., Ewens KG., Weber TM., Morley M & Burdick JT.: Mapping determinants of human gene expression by regional and whole genome association. Nature, 437: 1365-1369, 2005
data(chr20GGceuRMA) # be patient exprs(chr20GGceuRMA)[1:4,1:4] snps(chr20GGceuRMA)[1:4,1:4]