getRefflat {ACME}R Documentation

Get the refflat table from ucsc for the given genome

Description

Fetches the refflat table from ucsc, stores in temp dir and then gunzips it and reads it in.

Usage

getRefflat(genome = "hg17")

Arguments

genome The genome code from ucsc, like 'hg16', 'mm6', etc.

Value

A data frame mirroring the UCSC table structure.

Author(s)

Sean Davis <sdavis2@mail.nih.gov>

References

http://genome.ucsc.edu

See Also

findClosestGene

Examples

rf <- getRefflat('hg17')

[Package ACME version 1.4.0 Index]