Algorithms for Calculating Microarray Enrichment (ACME)


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Documentation for package ‘ACME’ version 1.4.0

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aGFF-class Class for storing GFF-like data
aGFFCalc-class Class "aGFFCalc"
do.aGFF.calc Perform ACME calculation
example.agff An example ACME data structure of class aGFF
findClosestGene Find closest refseq gene
findRegions Find all regions in data above p-value threshold
getRefflat Get the refflat table from ucsc for the given genome
plot,aGFF-method Class for storing GFF-like data
plot,aGFFCalc-method Class "aGFFCalc"
print,aGFF-method Class for storing GFF-like data
print,aGFFCalc-method Class "aGFFCalc"
read.resultsGFF Read Nimblegen GFF files
show,aGFF-method Class for storing GFF-like data
show,aGFFCalc-method Class "aGFFCalc"
write.sgr Write Affy IGB .sgr format files