aGFFCalc-class {ACME} | R Documentation |
Store results of ACME calculations
Objects can be created by calls of the form new("aGFFCalc", ...)
.
call
:"call"
, contains the
exact call to do.aGFF.calc, for historical purposesthreshold
:"numeric"
, the
threshold used in the calculationcutpoints
:"numeric"
, the data
value above which probes were considered positivevals
:"matrix"
, equivalent in
size to the original data matrix, containing the calculated
p-values from the ACME algorithmannotation
:"data.frame"
,
currently a copy of the original annotation, possibly reordered in
chromosome order data
:"matrix"
, the original
data, possibly reorderedsamples
:"data.frame"
, sample
metadata
Class "aGFF"
, directly.
signature(x = "aGFFCalc", ask=FALSE)
: plot the results of an
ACME calculationsignature(x = "aGFFCalc")
: brief overview of the
objectsignature(object = "aGFFCalc")
: brief overview of
the objectSean Davis <sdavis2@mail.nih.gov>
data(example.agff) example.agffcalc <- do.aGFF.calc(example.agff,window=1000,thresh=0.9) example.agffcalc