AffyQA {AffyExpress} | R Documentation |
Create quality control report in an HTML file that contains a set of assessment plots, including Affymetrix recommended quality assessment, RNA quality assessment, sample quality assessment, quality diagnostic using PLM (pseudo-chip images and NUSE and RLE plots) in your current working directory.
AffyQA(parameters, raw, Output="AffyQA.html")
parameters |
a list of variables |
raw |
an 'AffyBatch' |
Output |
name of the output file |
This function only create an html file
Xiwei Wu xwu@coh.org, Xuejun Arthur Li xueli@coh.org
## Not run: data(testData) AffyQA(parameters=c("group", "gender"), testData) ## End(Not run)