Affymetrix Quality Assessment and Analysis Tool


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Documentation for package ‘AffyExpress’ version 1.2.0

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AffyInteraction Analyze interaction effect and produce output
AffyQA Microarray quality control and assessment
AffyRegress Select differentially expressed genes, and output the result to a html file
Filter filter an 'ExpressionSet' using different methods
interaction.result2html output differentially expressed genes for the interaction model to a HTML file
make.contrast Create a contrast matrix
make.design Create a Design Matrix
post.interaction Create a list of tables for the result based on the main effect variable
pre.process Converting
regress Run regression to fit genewise linear model
result2html output differentially expressed genes to a HTML file
select.sig.gene select differentially expressed genes based on p value and/or fold change
testData AffyBatch instance testData