YEAST-class {AnnBuilder} | R Documentation |
This class is a sub-class of pubRepo that is implemented specifically to parse the data ftp://ftp.yeastgenome.org/pub/yeast/sequence_similarity/domains/domains.tab
Objects can be created by calls of the form new("YEAST", ...)
.
A constructor (YEAST) is available and should be used to instatiate
objects of YEAST
srcUrl
:"character", from class
"pubRepo"
a character string for the surce url where data
will be downloaded/processedparser
:"character", from class
"pubRepo"
a character string for the name of the file
containing a segment of perl code with instructions on how the
source data will be processed and output be generatedbaseFile
:"character", from
class "pubRepo"
a character string for the name of the file
used to be parsed. The default file name is "domains.tab".
Class "pubRepo"
, directly.
signature(object = "YEAST")
: A method to parse
a source file using a specified parserTing-Yuan Liu
ftp://ftp.yeastgenome.org/pub/yeast/sequence_similarity/domains/domains.tab
## Not run: ## create YEAST class yeast <- YEAST(srcUrl="ftp://ftp.yeastgenome.org/pub/yeast/sequence_similarity/domains/", baseFile="domains.tab") yeastDomain <- parseData(yeast) head(yeastDomain) ## End(Not run)