GOXMLParser {AnnBuilder} | R Documentation |
Generate R environment
objects containing data parsed from the
Gene Ontology (GO) XML data file. The GO data file is available from
http://www.geneontology.org. This parser is designed to parse
the go_YYYYMM-termdb.obo-xml
file.
GOXMLParser(fileName)
fileName |
Name of the XML file containing the GO source data in obo-xml format. |
A list of environment
objects representing the GO data
structures. The environments returned are:
TERM |
See GOTERM environment in the GO package |
BPPARENTS |
See the GOBPPARENTS environment in the GO data packagey |
MFPARENTS |
See the GOMFPARENTS environment in the GO data package |
CCPARENTS |
See the GOCCPARENTS environment in the GO data package |
BPCHILDREN |
See the GOBPCHILDREN environment in the GO data package |
MFCHILDREN |
See the GOMFCHILDREN environment in the GO data package |
CCCHILDREN |
See the GOCCCHILDREN environment in the GO data package |
OBSOLETE |
See the GOOBSOLETE environment in the GO data package |
BPOFFSPRING |
See the GOBPOFFSPRING environment in the GO data package |
MFOFFSPRING |
See the GOMFOFFSPRING environment in the GO data package |
CCOFFSPRING |
See the GOCCOFFSPRING environment in the GO data package |
BPANCESTOR |
See the GOBPANCESTOR environment in the GO data package |
MFANCESTOR |
See the GOMFANCESTOR environment in the GO data package |
CCANCESTOR |
See the GOCCANCESTOR environment in the GO data package |
Chenwei Lin, John Zhang, Seth Falcon