DNAcopy-internal {DNAcopy}R Documentation

Internal DNAcopy functions

Description

Internal functions of package DNAcopy.

Usage

changepoints(genomdat, data.type = "logratio", alpha = 0.01, sbdry, sbn,
                 nperm = 10000, p.method="hybrid", window.size = NULL,
                 overlap = 0.25, kmax=25, nmin=200, trimmed.SD = NULL,
                 undo.splits = "none", undo.prune = 0.05, undo.SD = 3,
                 verbose = 1, ngrid=100, tol=1e-6)
changepoints.prune(genomdat, lseg, change.cutoff=0.05)
changepoints.sdundo(genomdat, lseg, trimmed.SD, change.SD=3)
trimmed.variance(genomdat, trim=0.025)
inflfact(trim)

Details

These are not to be called directly by the user


[Package DNAcopy version 1.12.0 Index]