DNA copy number data analysis


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Documentation for package ‘DNAcopy’ version 1.12.0

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CNA Create ‘Copy Number Array’ data object
coriell Array CGH data set of Coriell cell lines
cytoBand Cytogenic band data
default.DNAcopy.bdry Sequential stopping boundary
DNAcopy Results of segmenting a CNA data object
getbdry Sequential stopping boundary
plot.DNAcopy Plot the data and results from segment of a CNA object
print.CNA Create ‘Copy Number Array’ data object
print.DNAcopy Results of segmenting a CNA data object
segment Genome Segmentation Program
segments.p p-values for the change-points
smooth.CNA Smooth a ‘Copy Number Array’ data object
subset.CNA Subset a ‘Copy Number Array’ data object
subset.DNAcopy Subset a DNAcopy data object