extractAlleles {GeneticsBase} | R Documentation |
functions for extracting allele levels, allele pairs, and allele codes
extractAlleles(object, which = c(1, 2), codes = FALSE, allow.partial.missing = FALSE, marker, obs)
object |
geneSet object |
which |
allele pair number - 1 or 2. Default if both |
codes |
If FALSE (default), then calleles are shown as characters, else numeric |
allow.partial.missing |
Whether partical matching should be allowed ( default is FALSE) |
marker |
marker names |
obs |
Number of observations (samples) to be displayed. Default is all. |
Gregory R. Warnes warnes@bst.rochester.edu and Nitin Jain nitin.jain@pfizer.com