alleleSummary {GeneticsBase}R Documentation

Summary of allele information

Description

Summary of allele information.

Usage

alleleSummary(object, 
              by = NULL, 
              confidence = 0.95, 
              alpha = 1 - confidence, 
              show = TRUE, 
              verbose = FALSE, 
              includeOverall = FALSE, 
              omitRepeats = TRUE, 
              ...)

Arguments

object geneSet object
by optional column name, by which the summary is desired. Default is NULL.
confidence confidence intervals of Genotype frequencies within each marker (default is 95%)
alpha Type -1 error rate = (1- confidence)
show No longer used
verbose Logical value (TRUE/FALSE), showing whether every 50th marker should be printed, default = FALSE
includeOverall logical value (TRUE/FALSE) indicating whether overall summary is also needed, default = FALSE
omitRepeats logical value (TRUE/FALSE) indicating whether Gene name and marker name should be printed repeatedly for each Genotype, default = TRUE
... Optional arguments

Author(s)

Nitin Jain nitin.jain@pfizer.com

Examples


library(GeneticsBase)
data(CAMP)

temp <- alleleSummary(CAMP)

print(temp) # display
txt(temp, filename="alleleSummary.txt")   # txt file
html(temp, filename="alleleSummary.html") # html file
latex(temp, filename="alleleSummary.tex") # latex file


[Package GeneticsBase version 1.2.0 Index]