markerSummary {GeneticsBase}R Documentation

Generate allele, genotype, or LD summary objects

Description

Generate allele, genotype, or LD summary objects

Usage

markerSummary(object, 
              covariate = NULL, 
              confidence = 0.95, 
              alpha = 1 - confidence, 
              show = TRUE, 
              ...)
## S3 method for class 'markerSummary':
print(x, ...)

Arguments

object
covariate
confidence desired confidence interval for genotype and allele frequencies in each marker
alpha Type -1 error rate = (1- confidence)
show No longer used
x object of class 'markerSummary'
... optional additional arguments

Details

We can print the alleleSummary and genotypeSummary on screen, or save in html, tex, or pdf format using appropriate methods.

Author(s)

Nitin Jain nitin.jain@pfizer.com

Examples


library(GeneticsBase)
data(CAMP)
temp <- markerSummary(CAMP)

print.markerSummary(temp)
html.markerSummary(temp, filename="test")
latex.markerSummary(temp, filename="test")


[Package GeneticsBase version 1.2.0 Index]