Operating characteristics plus sample size and local fdr for microarray experiments


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Documentation for package ‘OCplus’ version 1.12.0

User Guides and Package Vignettes

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Help Pages

average.fdr Average a two-dimensional local false discovery rate
CDF Compute FDR for general scenarios
CDFmix Compute FDR for general scenarios
DrawContourlines Draw and label a set of pre-calculated isolines
EOC Estimated or empirical FDR, sensitivity, etc as a function of cutoff level
FDR Compute FDR for general scenarios
fdr1d Compute classical local false discovery rate
fdr2d Compute two-dimensional local false discovery rate
FDRp Estimated or empirical FDR, sensitivity, etc as a function of cutoff level
MAsim Simulate two-sample microarray data
OCshow Show one ore several OC curves graphically
p0 Display functions for local fdr output
PermNull Compute multiple parallel t-statistics
plot.FDR.result Plot the empirical FDR as a function of the cutoff level
plot.fdr1d.result Plot univariate local false discovery output
plot.fdr2d.result Plotting the bivariate local false discovery results
samplesize FDR as a function of sample size
smooth1d Smoothing a vector of counts
summary.fdr.result Display functions for local fdr output
tMixture Fit a mixture of t-distributions
TOC Theoretical FDR and sensitivity as a function of cutoff level
topDE Display functions for local fdr output
Tornadoplot Plotting the bivariate local false discovery results
tstatistics Compute multiple parallel t-statistics
Volcanoplot Plotting the bivariate local false discovery results