readSmc {PGSEA}R Documentation

Read SMC files

Description

This function reads in SMCs (simple molecular concepts) from individual text files.

Usage

readSmc(files)

Arguments

files a character vector of file names

Value

A list of SMC objects

Author(s)

Kyle Furge <kyle.furge@vai.org> and Karl Dykema <karl.dykema@vai.org>

References

??

See Also

writeSmc

Examples


datadir <- system.file("data", package = "PGSEA")
sample <- readGmt(file.path(datadir, "sample.gmt"))
str(sample)
sample[[1]]@reference <- "fileName"

## Not run: 
        writeSmc(sample[[1]])
        smc <- readSmc("fileName-0.txt")
## End(Not run)


[Package PGSEA version 1.6.0 Index]