SNPperMeta-class {RSNPper} | R Documentation |
gives immediate access to location and allele, methods extract material on allele frequencies in different populations, and relationships to particular mRNAs/genes.
Objects can be created by calls of the form new("SNPperMeta", ...)
.
The extend matrix (so that colnames are propagated).
.Data
:"matrix"
see example popDetails
:"data.frame"
information on populations that have been genotyped for reference geneDetails
:"data.frame"
information
on mRNAs (typically) near the SNP; putative SNP roles (in Promoter,
3' UTR, or Exon) are often denotedsubmitters
:"ANY"
unprocessed
XML on submitter identity.
Class "matrix"
, from data part.
Class "structure"
, by class "matrix"
.
Class "array"
, by class "matrix"
.
Class "vector"
, by class "matrix", with explicit coerce.
Class "vector"
, by class "matrix", with explicit coerce.
popDetails, geneDetails, submitters functions are available.
VJ Carey <stvjc@channing.harvard.edu>
if (interactive()) { lkc = SNPinfo("6060535") lkc popDetails(lkc) geneDetails(lkc) lkg = geneInfo("CPNE1") lkg dim(allGeneMeta(lkg)) }