butsInTBox |
A function that is the main interface for SAGElyzer |
calNormFact |
Functions to merge SAGE libraries based on unique SAGE tags |
chunkKNN |
Function to filter out the k nearest neighbors for a given tag |
closeConn |
Functions for database connection and manipulation |
con4Unix |
Functions for database connection and manipulation |
con4Win |
Functions for database connection and manipulation |
doTag2UG |
Annotating SAGE tags using data from public databases |
doUG2Tag |
Annotating SAGE tags using data from public databases |
env2File |
Annotating SAGE tags using data from public databases |
executeQuery |
Functions for database connection and manipulation |
findNeighborTags |
Function to filter out the k nearest neighbors for a given tag |
findNG4Tag |
Supporting functions |
GEOSAGEWidget |
Widgets that provide the interface |
getBinding |
Supporting functions |
getColNames |
Function to filter out the k nearest neighbors for a given tag |
getColSQL |
Functions to merge SAGE libraries based on unique SAGE tags |
getColumnNames |
Functions that provide an interface to allow users to query a SAGE library database table |
getDBArgs |
Supporting functions |
getDMProc |
A function that is the main interface for SAGElyzer |
getFileNames |
Automatically downloads SAGE libraries from NCBI |
getGEOSAGE |
Automatically downloads SAGE libraries from NCBI |
getKNN |
Function to filter out the k nearest neighbors for a given tag |
getKNNProc |
A function that is the main interface for SAGElyzer |
getLibCounts |
Supporting functions |
getLibInfo |
Functions to merge SAGE libraries based on unique SAGE tags |
getLibNNum |
Functions to merge SAGE libraries based on unique SAGE tags |
getMapFileName |
Annotating SAGE tags using data from public databases |
getNormFactor |
Functions that get normalization factors for SAGE libraries |
getSAGEKNN |
Supporting functions |
getSAGESQL |
Function to filter out the k nearest neighbors for a given tag |
getSampleId |
Automatically downloads SAGE libraries from NCBI |
getSLyzerArgs |
Supporting functions |
getTableNames |
Functions that provide an interface to allow users to query a SAGE library database table |
getTag |
Supporting functions |
getTargetRow |
Function that retrieves data from selected SAGE libraries for a given SAGE tag |
getTasks |
A function that is the main interface for SAGElyzer |
getTaskTips |
A function that is the main interface for SAGElyzer |
getTotalRNum |
Function to filter out the k nearest neighbors for a given tag |
getUniqTags |
Functions to merge SAGE libraries based on unique SAGE tags |
getUnixDBArgs |
Supporting functions |
getWinDBArgs |
Supporting functions |
KNNArgsWidget |
A function that is the main interface for SAGElyzer |
linkTag2UG |
Supporting functions |
makeConnection |
Functions for database connection and manipulation |
mapFile2Tag |
Functions to merge SAGE libraries based on unique SAGE tags |
mapLib2File |
Supporting functions |
mapSAGE2UG |
Supporting functions |
mapSAGEWidget |
Widgets that provide the interface |
mergeSAGE |
Functions to merge SAGE libraries based on unique SAGE tags |
mergeSAGEWidget |
Widgets that provide the interface |
modSLyzerArgs |
Supporting functions |
noChunkKNN |
Function to filter out the k nearest neighbors for a given tag |
parseSAGE |
Automatically downloads SAGE libraries from NCBI |
procSAGE |
Supporting functions |
query4Unix |
Functions for database connection and manipulation |
queryInfoDB |
Functions that get normalization factors for SAGE libraries |
querySAGE |
Functions that provide an interface to allow users to query a SAGE library database table |
remapTagNUG |
Supporting functions |
runSLyzer |
Supporting functions |
SAGE4Unix |
Widgets that provide the interface |
SAGEFromGEO |
Supporting functions |
SAGELyzer |
Function to filter out the k nearest neighbors for a given tag |
SAGEMapper |
Annotating SAGE tags using data from public databases |
SAGEToolTips |
A list that maps SAGE task or procedure names to tips |
SAGEWidget |
A function that is the main interface for SAGElyzer |
setKNNArgs |
Supporting functions |
setSLyzerArgs |
Supporting functions |
showDBError |
Supporting functions |
tableExists |
Functions for database connection and manipulation |
writeSAGE2DB |
Functions to merge SAGE libraries based on unique SAGE tags |
writeSAGE4Unix |
Functions to merge SAGE libraries based on unique SAGE tags |
writeSAGE4Win |
Functions to merge SAGE libraries based on unique SAGE tags |
writeSAGECounts |
Functions to merge SAGE libraries based on unique SAGE tags |
writeSAGEKNN |
Supporting functions |
writeSLyzerArgs |
Supporting functions |