findNG4Tag {SAGElyzer}R Documentation

Supporting functions

Description

These are all supporting functions that may of no use out side of thecontext

Usage

getDBArgs()
getUnixDBArgs(binding = "pg")
getBinding(binding = c("pg"))
getWinDBArgs()
getTag()
setKNNArgs()
getSLyzerArgs(argName = "SAGELyzerArgs")
writeSLyzerArgs(args, argName = "SAGELyzerArgs")
modSLyzerArgs(argName, value)
setSLyzerArgs()
runSLyzer()
writeSAGEKNN(knn, targetSAGE)
getSAGEKNN()
getLibCounts()
mapLib2File()
linkTag2UG()
remapTagNUG(mappings)
SAGEFromGEO()
procSAGE()
mapSAGE2UG()
showDBError()
findNG4Tag()

Arguments

binding a character string that can be "pg" at this time for PostgreSQL
argName A character string for the name of a argument stored in an environment that can be access for stored information
args Contents that will be written to the environment that can be accessed later
value Same as args above
knn Results form running knn
targetSAGE A character string for a tag sequence that is compared to using knn
mappings A data from that contains mappings between SAGE tags and UniGene ids

Details

These functions should only be used with the main functions. Users do not need to call them out side of the main functions.

Value

The functions returns various values

Author(s)

J. Zhang

References

http://www.ncbi.nlm.nih.gov/geo/query/

See Also

mergeSAGE

Examples

  #No examples provided

[Package SAGElyzer version 1.16.0 Index]