plotSnp {SNPchip} | R Documentation |
Plots copy number and genotype call versus physical position for an arbitrary number of samples and chromosomes.
plotSnp(object, snpset, ...)
object |
An object extending ParESet |
snpset |
An object extending SnpLevelSet |
... |
Arguments to par |
See examples in the vignette
par
,
ParESet-class
,
ParSnpCallSet-class
,
ParSnpCopyNumberSet-class
,
ParSnpSet-class
data(sample.snpset) chr1 <- sample.snpset[chromosome(sample.snpset) == "1", 1] graph.par <- getPar(chr1, use.chromosome.size=TRUE) plotSnp(graph.par, chr1)