plotCytoband {SNPchip}R Documentation

Plots cytoband for one chromosome

Description

Adds cytobands to views of chromosome copy number and genotype plots.

Usage

plotCytoband(chromosome, cytoband, xlim, xaxs="r", new=TRUE,
label.cytoband=TRUE, cex.axis=1, outer=FALSE, ...)

Arguments

chromosome character string: which chromosome to draw the cytoband
cytoband data.frame containing cytoband information
xlim axis limits
xaxs see par
new logical: if TRUE, plots the cytoband on a new device
label.cytoband logical: if TRUE, labels the cytobands
cex.axis size of cytoband labels. See par
outer logical: whether to draw the labels in the outer margins. See par
... additional arguments to plot

Details

This function is meant to primarily be called by plotSnp and displayed beneath copy number and genotype estimates.

Value

Author(s)

Robert Scharpf and Jason Ting

References

See Also

plotSnp, cytoband, par, plot

Examples

plotCytoband("1")

[Package SNPchip version 1.2.1 Index]