plotSnp {SNPchip}R Documentation

Plots copy number and genotype calls against physical position

Description

Plots copy number and genotype call versus physical position for an arbitrary number of samples and chromosomes.

Usage

plotSnp(object, snpset, ...)

Arguments

object An object extending ParESet
snpset An object extending SnpLevelSet
... Arguments to par

Details

See examples in the vignette

Value

Note

Author(s)

References

See Also

par, ParESet-class, ParSnpCallSet-class, ParSnpCopyNumberSet-class, ParSnpSet-class

Examples


data(sample.snpset)
chr1 <- sample.snpset[chromosome(sample.snpset) == "1", 1]
graph.par <- getPar(chr1, use.chromosome.size=TRUE)
plotSnp(graph.par, chr1)


[Package SNPchip version 1.2.1 Index]