plotCytoband {SNPchip} | R Documentation |
Adds cytobands to views of chromosome copy number and genotype plots.
plotCytoband(chromosome, cytoband, xlim, xaxs="r", new=TRUE, label.cytoband=TRUE, cex.axis=1, outer=FALSE, ...)
chromosome |
character string: which chromosome to draw the cytoband |
cytoband |
data.frame containing cytoband information |
xlim |
axis limits |
xaxs |
see par |
new |
logical: if TRUE, plots the cytoband on a new device |
label.cytoband |
logical: if TRUE, labels the cytobands |
cex.axis |
size of cytoband labels. See par |
outer |
logical: whether to draw the labels in the outer margins. See par |
... |
additional arguments to plot |
This function is meant to primarily be called by plotSnp and displayed beneath copy number and genotype estimates.
Robert Scharpf and Jason Ting
plotCytoband("1")