createGODataFrame {ScISI}R Documentation

A function to create a Dataframe from the GO protein complexes

Description

This function takes a named list (the names are the GO ID's representing some protein complex and the list elements are character vectors consisting of the members of each particular complex) and an Bipartite Graph Incidence Matrix and creates a dataframe with three columns: complex name, GO ID, and complex description.

Usage

createGODataFrame(cMembers, goMat)

Arguments

cMembers Named list with GO ID's as names and character vector consisting of proteins of the respective complex
goMat Bipartite Graph Incidence Matrix

Details

This function takes the output parameters of createGOMatrix and getGOInfo and creates the bipartite graph incidence matrix.

Value

Dataframe:

names The names of the GO Complexes
ID The GO IDs' of the complexes
description The description give by GO

Author(s)

Tony Chiang

References

www.geneontology.org

Examples

#go = getGOInfo(wantAllComplexes = FALSE)
#goM = createGOMatrix(go)
#createGODF(go, goM)

[Package ScISI version 1.10.0 Index]