getCopyNumberLocation {VanillaICE}R Documentation

Typically the mean copy number for the hidden states

Description

Use to provide default values of the copy number for the hidden states. We typically assume that the distribution of the observed copy number (after suitable transformation) is approximately Gaussian and centered at the true copy number.

Usage

getCopyNumberLocation(object)

Arguments

object An object of class HmmSnpSet or HmmSnpCopyNumberSet

Details

By default, we assume that the true underlying copy number for a deletion is 1, 2 for a normal region (diploid), and 3 for an amplification.

Value

numerical vector of locations for the Gaussian distribution for copy number

Note

Not typically called directly

Author(s)

who you are

References

See Also

Examples






[Package VanillaICE version 1.0.2 Index]