hmm {VanillaICE} | R Documentation |
Fits a hidden Markov model to high throughput SNP chip data
hmm(object, ...)
object |
an object extending hSet |
... |
See details |
An object of the same class
further notes
RB Scharpf et al. (2007), Department of Biostatistics Working Papers, Working Paper 136
The package callsConfidence is available here: http://www.biostat.jhsph.edu/~rscharpf/software/index.html
data(chromosome1) ## Not run: callsIce(hmmset) <- FALSE copyNumberIce(hmmset) <- FALSE fitVanilla <- hmm(hmmset) require(callsConfidence) callsIce(hmmset) <- TRUE copyNumberIce(hmmset) <- TRUE fitIce <- hmm(hmmset, flavor="ICE", arm="both") ## End(Not run)