HmmSnpCopyNumberSet-class {VanillaICE} | R Documentation |
Objects can be created by calls of the form
new("HmmSnpCopyNumberSet", assayData, phenoData, featureData,
experimentData, annotation, chromosomeAnnotation, calls,
callsConfidence, copyNumber, cnConfidence, ...)
.
locationCopyNumber
:"numeric"
scaleCopyNumber
:"NullOrMatrix"
log2
:"logical"
predictions
:"matrix"
distance
:"logical"
initialStateProbability
:"NullOrNumeric"
transitionProbability
:"NullOrNumericOrMatrix"
emissionProbability
:"NullOrMatrix"
likelihood
:"NullOrMatrix"
chromosomeArm
:"character"
stateNames
:"character"
chromosomeAnnotation
:"data.frame"
assayData
:"AssayData"
phenoData
:"AnnotatedDataFrame"
featureData
:"AnnotatedDataFrame"
experimentData
:"MIAME"
annotation
:"character"
.__classVersion__
:"Versions"
copyNumberIce
:"logical"
Class hSet-class
, directly.
Class AnnotatedSnpSet-class
, by class "hSet", distance 2.
Class AnnotatedSnpCallSet-class
, by class "hSet", distance 3.
Class AnnotatedSnpCopyNumberSet-class
, by class "hSet", distance 3, with explicit coerce.
Class SnpCallSet-class
, by class "hSet", distance 4.
Class class.eSet
, by class "hSet", distance 5.
Class VersionedBiobase-class
, by class "hSet", distance 6.
Class Versioned-class
, by class "hSet", distance 7.
Class SnpCopyNumberSet-class
, by class "hSet", distance 4, with explicit coerce.
Class class.eSet
, by class "hSet", distance 5, with explicit coerce.
Class VersionedBiobase-class
, by class "hSet", distance 6, with explicit coerce.
Class Versioned-class
, by class "hSet", distance 7, with explicit coerce.
signature(x = "HmmSnpCopyNumberSet")
signature(object = "HmmSnpCopyNumberSet")
signature(from = "AnnotatedSnpSet", to =
"HmmSnpCopyNumberSet")
signature(object = "HmmSnpCopyNumberSet")
signature(object = "HmmSnpCopyNumberSet")
signature(object = "HmmSnpCopyNumberSet")
signature(object = "HmmSnpCopyNumberSet")
signature(object = "HmmSnpCopyNumberSet")
signature(object = "HmmSnpCopyNumberSet")
signature(object = "HmmSnpCopyNumberSet")
signature(object = "HmmSnpCopyNumberSet")
signature(object = "HmmSnpCopyNumberSet", value = "ANY")
signature(object = "HmmSnpCopyNumberSet")
signature(object = "HmmSnpCopyNumberSet")
signature(object = "HmmSnpCopyNumberSet")
Robert Scharpf
HmmSnpSet-class
,
HmmSnpCallSet-class
hSet-class
showClass("HmmSnpCopyNumberSet")