getTransitionProbability {VanillaICE} | R Documentation |
The default transition probabilities for the HMM can be a matrix with dimension S x S, where S is the number of hidden states. Alternatively, one may specify transition probabilities that are a function of the distance (in base pairs) between adjacent SNPs.
getTransitionProbability(object)
object |
An object of one of the HMM classes defined in ICE |
A transition probability matrix.
RB Scharpf et al. (2007), Department of Biostatistics Working Papers, Working Paper 136 and CITATION FOR MA NEWTON PAPER