HmmSnpCallSet-class {VanillaICE} | R Documentation |
Objects can be created by calls of the form new("HmmSnpCallSet",
assayData, phenoData, featureData, experimentData, annotation,
chromosomeAnnotation, calls, callsConfidence, copyNumber, cnConfidence,
...)
.
probabilityCalledHomIfNormal
:"numeric"
probabilityCalledHetIfLoh
:"numeric"
predictions
:"matrix"
distance
:"logical"
initialStateProbability
:"NullOrNumeric"
transitionProbability
:"NullOrNumericOrMatrix"
emissionProbability
:"NullOrMatrix"
likelihood
:"NullOrMatrix"
chromosomeArm
:"character"
callsIce
:"logical"
stateNames
:"character"
chromosomeAnnotation
:"data.frame"
assayData
:"AssayData"
phenoData
:"AnnotatedDataFrame"
featureData
:"AnnotatedDataFrame"
experimentData
:"MIAME"
annotation
:"character"
.__classVersion__
:"Versions"
Class hSet-class
, directly.
Class oligoSnpSet-class
, by class "hSet", distance 2.
Class SnpCallSet-class
, by class "hSet", distance 3.
Class SnpCopyNumberSet-class
, by class "hSet", distance 3, with explicit coerce.
Class SnpCallSet-class
, by class "hSet", distance 4.
Class class.eSet
, by class "hSet", distance 5.
Class VersionedBiobase-class
, by class "hSet", distance 6.
Class Versioned-class
, by class "hSet", distance 7.
Class SnpCopyNumberSet-class
, by class "hSet", distance 4, with explicit coerce.
Class class.eSet
, by class "hSet", distance 5, with explicit coerce.
Class VersionedBiobase-class
, by class "hSet", distance 6, with explicit coerce.
Class Versioned-class
, by class "hSet", distance 7, with explicit coerce.
signature(x = "HmmSnpCallSet")
signature(object =
"HmmSnpCallSet")
signature(object = "HmmSnpCallSet")
signature(from = "AnnotatedSnpSet", to = "HmmSnpCallSet")
signature(object = "HmmSnpCallSet")
signature(object = "HmmSnpCallSet")
signature(object = "HmmSnpCallSet")
signature(object = "HmmSnpCallSet")
signature(object = "HmmSnpCallSet")
signature(object = "HmmSnpCallSet")
signature(object = "HmmSnpCallSet", value = "ANY")
signature(object = "HmmSnpCallSet")
Robert Scharpf
HmmSnpSet-class
,
HmmSnpCopyNumberSet-class
,
hSet-class
showClass("HmmSnpCallSet")