getCopyNumberLocation {VanillaICE} | R Documentation |
Use to provide default values of the copy number for the hidden states. We typically assume that the distribution of the observed copy number (after suitable transformation) is approximately Gaussian and centered at the true copy number.
getCopyNumberLocation(object)
object |
An object of class HmmSnpSet or HmmSnpCopyNumberSet |
By default, we assume that the true underlying copy number for a deletion is 1, 2 for a normal region (diploid), and 3 for an amplification.
numerical vector of locations for the Gaussian distribution for copy number
Not typically called directly
who you are