getTransitionProbability {VanillaICE}R Documentation

Transition probabilities for the HMM

Description

The default transition probabilities for the HMM can be a matrix with dimension S x S, where S is the number of hidden states. Alternatively, one may specify transition probabilities that are a function of the distance (in base pairs) between adjacent SNPs.

Usage

getTransitionProbability(object)

Arguments

object An object of one of the HMM classes defined in ICE

Details

Value

A transition probability matrix.

Note

Author(s)

References

RB Scharpf et al. (2007), Department of Biostatistics Working Papers, Working Paper 136 and CITATION FOR MA NEWTON PAPER

See Also

distance

Examples






[Package VanillaICE version 1.0.2 Index]