readCcg {affxparser}R Documentation

Reads an Affymetrix Command Console Generic (CCG) Data file

Description

Reads an Affymetrix Command Console Generic (CCG) Data file. The CCG data file format is also known as the Calvin file format.

Usage

readCcg(pathname, verbose=0, .filter=NULL, ...)

Arguments

pathname The pathname of the CCG file.
verbose An integer specifying the verbose level. If 0, the file is parsed quietly. The higher numbers, the more details.
.filter A list.
... Not used.

Details

Note, the current implementation of this methods does not utilize the Affymetrix Fusion SDK library. Instead, it is implemented in R from the file format definition [1].

Value

A named list structure consisting of ...

About the CCG file format

A CCG file, consists of a "file header", a "generic data header", and "data" section, as outlined here:

Author(s)

Henrik Bengtsson (http://www.braju.com/R/)

References

[1] Affymetrix Inc, Affymetrix GCOS 1.x compatible file formats, April, 2006. http://www.affymetrix.com/support/developer/

See Also

readCcgHeader(). readCdfUnits().


[Package affxparser version 1.10.2 Index]