appendCdfEnvAffy |
append probe sets to a CdfEnvAffy |
buildCdfEnv.matchprobes |
functions related to cdfenvs |
CdfEnv |
functions related to cdfenvs |
CdfEnvAffy-class |
Class "CdfEnvAffy" |
cdfenvEx |
CdfEnvAffy |
coerce,CdfEnvAffy,Cdf-method |
Class "CdfEnvAffy" |
coerce,CdfEnvAffy,environment-method |
Class "CdfEnvAffy" |
copyCdfEnvAffy |
make a copy of a CdfEnvAffy |
countduplicated |
Count the number of times probes are used |
countskip.FASTA.entries |
Functions to work with FASTA files / connections |
geneNames,CdfEnvAffy-method |
Class "CdfEnvAffy" |
geneNames.CdfEnvAffy |
get the names of the known probe sets |
getCdfEnvAffy |
functions related to cdfenvs |
getxy.probeseq |
A function to get the XY coordinates from a probes sequences data frame |
grep.FASTA.entry |
Functions to work with FASTA files / connections |
index2xy |
Functions to shuttle from indexes to XY coordinates |
index2xy,CdfEnvAffy-method |
Class "CdfEnvAffy" |
index2xy.CdfEnvAffy |
Functions to shuttle from indexes to XY coordinates |
indexProbes,CdfEnvAffy,character-method |
Class "CdfEnvAffy" |
indexProbes.CdfEnvAffy |
indexes for probes |
plot,CdfEnvAffy,missing-method |
Class "CdfEnvAffy" |
plot.CdfEnvAffy |
A function to ‘plot’ a CdfEnvAffy |
print.FASTA |
Functions to work with FASTA files / connections |
printValidCdfEnvAffy |
Check validity of a CdfEnvAffy. |
read.FASTA.entry |
Functions to work with FASTA files / connections |
read.n.FASTA.entries |
Functions to work with FASTA files / connections |
read.n.FASTA.headers |
Functions to work with FASTA files / connections |
read.n.FASTA.sequences |
Functions to work with FASTA files / connections |
removeIndex |
A function to remove probes in an environment |
show,CdfEnvAffy-method |
Class "CdfEnvAffy" |
skip.FASTA.entry |
Functions to work with FASTA files / connections |
unique.CdfEnvAffy |
Remove duplicated elements from a CdfEnvAffy |
validAffyBatch |
Check validity of a CdfEnvAffy. |
validCdfEnvAffy |
Check validity of a CdfEnvAffy. |
wrapCdfEnvAffy |
functions related to cdfenvs |
write.FASTA |
Functions to work with FASTA files / connections |
xy2index |
Functions to shuttle from indexes to XY coordinates |
xy2index,CdfEnvAffy-method |
Class "CdfEnvAffy" |
xy2index.CdfEnvAffy |
Functions to shuttle from indexes to XY coordinates |
[,CdfEnvAffy-method |
Class "CdfEnvAffy" |