visualiseQualityParameters {arrayMagic}R Documentation

Graphical representation of quality parameters

Description

Graphical representation of quality parameters

Usage

visualiseQualityParameters(qualityParameters, savePath, fileName="visualiseQualityParametersOutput.pdf", width=25, height=25, plotOutput="pdf")

Arguments

qualityParameters data.frame; required; contained in the return value of qualityParameters
fileName character string; required; default: "visualiseQualityParametersOutput.pdf"
savePath character string; optional; default: missing
width graphics window width
height graphics window height
plotOutput character string; required; either "screen", "pdf" or "win.metafile"; default: "pdf"

Details

For details on the specific parameters see qualityParameters. Lines are only used for easier detection of outliers. The ordering of the hybridisation is somehow arbitrary, and only reflects the (initial) ordering. The "correlation" line for example graphically represents the correlation coefficients calculated between the green and red channel for each hybridisation. The horizontal blue line is drawn at the height of one. The function qualityDiagnostics calls visualiseQualityParameters.

Value

A graphical representation of quality parameters. qualityDiagnostics does call visualiseQualityParameters

Author(s)

Andreas Buness <a.buness@dkfz.de>

See Also

qualityParameters; qualityDiagnostics

Examples

        

[Package arrayMagic version 1.16.1 Index]