KLD.matrix {bioDist} | R Documentation |
Calculate KLD by estimating by smoothing log( f(x)/g(x))*f(x) and then integrating.
KLD.matrix(x, ...)
x |
n by p matrix or ExpressionSet; if x is an ExpressionSet, the function works against its 'exprs' slot |
... |
arguments passed to KLD.matrix :
locfit or density to estimate integrand, default is c("locfit", "density")(i.e. both methods) |
The pairwise distances between the rows of x
are computed.
An object of class dist
with the pairwise, between rows,
Kullback-Leibler distances.
Beiying Ding, Vincent Carey
cor.dist
, spearman.dist
,
tau.dist
, dist
,
KLdist.matrix
,mutualInfo
x <- matrix(rnorm(100),nrow=5) KLD.matrix(x, method="locfit",supp=range(x))