makeSubMotifCon {cosmo}R Documentation

Constructing a submotif constraint

Description

This function constructs a texttt{subMotifCon} object representing a constraint on the unknown position weight matrix that requires the motif to contain a given submotif

Usage

makeSubMotifCon(submotif, minfreq)

Arguments

submotif character the submotif
minfreq numeric roughly, the minimum frequency with which nucleotides in the submotif must occur in the motif

Details

Value

An object of class texttt{subMotifCon}.

Author(s)

Fabian Gallusser, fgallusser@berkeley.edu

See Also

boundCon, shapeCon, subMotifCon, posFreqCon, shapeDiffCon, palCon

Examples

pfc <- makeSubMotifCon("CGC", 0.8)

[Package cosmo version 1.4.0 Index]