stjd {macat} | R Documentation |
Example for list-structure used by many functions in MACAT. It's based on the gene expression data published by Yeoh et al. in 2002.[Yeoh et al. Classification, subtype discovery, and prediction of outcome in pediatric acute lymphoblastic leukemia by gene expression profiling. Cancer Cell. March 2002. 1: 133-143. The data has been preprocessed using 'vsn' on probe level and the probes have been summed up using 'median polish'. This is a subset of the data, containg only the 5000 probe sets with the highest across the samples and 10 exemplary samples, 5 from T-lymphocytic Acute Lymphocytic Leukemia (ALL) and 5 from B-lymphocytic ALL.
data(stjd)
List of class 'MACATData' with 6 components:
Yeoh et al. Classification, subtype discovery, and prediction of outcome in pediatric acute lymphoblastic leukemia by gene expression profiling. Cancer Cell. March 2002. 1: 133-143.
buildMACAT
,stjude
in package 'stjudem' for
the complete expression data
data(stjd) summary(stjd)