reverseSeq {matchprobes}R Documentation

Reverse Sequence

Description

Functions to obtain the reverse and reverse complement of a sequence

Usage

reverseSeq(seq)
revcompDNA(seq)
revcompRNA(seq)

Arguments

seq Character vector. For revcompRNA and revcompDNA the sequence should consist of appropriate letter codes: [ACGUN] and ACGTN, respectively.

Details

The function reverses the order of the constituent character strings of its argument.

Value

A character vector of the same length as seq.

Author(s)

R. Gentleman, W. Huber, S. Falcon

See Also

basecontent,complementSeq

Examples

 w <-  c("hey there", "you silly fool")
 reverseSeq(w)

 w <- "able was I ere I saw Elba"
 reverseSeq(w)

rna1 <- "UGCA"
revcompRNA(rna1)

dna1 <- "TGCA"
revcompDNA(dna1)


[Package matchprobes version 1.10.0 Index]