hgTests {ppiStats} | R Documentation |
This function takes the instances of the hyperGParams and conducts a (conditional) test for over/under representation of some category under the Hypergeometric distribution.
ppiHGTest4GO(parameter, filename, append=TRUE, label = "Experiment name here", typeGeneSet = "Describe the gene set here", cs=50) ppiHGTest4PFAM(parameter, filename, append = TRUE, label = "Experiment Name Here", typeGeneSet = "Describe the Gene Set Here", cs = 50)
parameter |
An object of hyperGParams. |
filename |
A character vector. The name given to the .html file produced. |
append |
A logical. If multiple tests are conducted using the same filename, then the .html file will be appended if TRUE or over-written if FALSE. |
label |
A character. The should give a description of the experiment used to obtain the gene set. |
typeGeneSet |
A character: this character vector should adequately describe the gene set itself. |
cs |
A numeric. This gives a cut-off for the size of the categories in which we conduct the test. |
A instance of the class hyperGTest as well as an .html file.
T Chiang