numericCHR {quantsmooth} | R Documentation |
The function converts chromosomal ids to their numeric form, and the sex chromosomes to values between 98 and 100. This simplifies sorting on chromosome ID
numericCHR(CHR) characterCHR(CHR)
CHR |
character/numeric vector for both functions the mode of the input is not forced. For numericCHR strings "X","Y" and "XY" are converted to 98,99 and 100 respectively. |
numericCHR
returns a numeric vector of same length as CHR
characterCHR
returns a character vector of same length as CHR
Jan Oosting
chroms<-c("3","2","8","X","7","Y","5","1","9","10","11","12","4","6") sort(chroms) sort(numericCHR(chroms)) characterCHR(sort(numericCHR(chroms)))