plotChromosome {quantsmooth}R Documentation

Wrapper for plotSmoothed

Description

This function is a wrapper for plotSmoothed, to make data subsetting easier

Usage

plotChromosome(gendata, chrompos, chromosome, dataselection = NULL, ylim = NULL, normalized.to = NULL, grid = NULL, smooth.lambda = 2, interval = 0.5, ...)

Arguments

gendata numeric matrix or data.frame
chrompos chrompos object with same numer of rows as gendata
chromosome numeric, chromosme to show
dataselection optional, subset of samples/columns in gendata
ylim limits for plot
normalized.to y-value(s) for line
grid x-value(s) for line
smooth.lambda smoothing parameter, see quantsmooth
interval position of extra lines besides median, see plotSmoothed
... extra arguments for plotSmoothed

Details

Value

The function is used for its side effects

Author(s)

Jan Oosting

See Also

plotSmoothed, quantsmooth


[Package quantsmooth version 1.4.0 Index]