mapGenes2GOgraph {topGO}R Documentation

~~function to do ... ~~

Description

TODO: This function builds for each node a vector containing all the genes/probes that can be annotated to that node. It starts with the nodes on the lowest level, and then pushes their genes to the parents/ancestors

Usage

mapGenes2GOgraph(dag, mostSpecificGOs, nodeLevel = buildLevels(dag, leafs2root = TRUE))

Arguments

dag ~~Describe dag here~~
mostSpecificGOs ~~Describe mostSpecificGOs here~~
nodeLevel ~~Describe nodeLevel here~~

Details

~~ If necessary, more details than the description above ~~

Value

An object of class graphNEL-class is returned. The attribute of each node in the graph contains a mapping of the genes/probes.

Author(s)

Adrian Alexa

See Also

topGOdata-class, buildLevels, buildGOgraph.topology, annFUN.hgu

Examples

##---- Should be DIRECTLY executable !! ----
##-- ==>  Define data, use random,
##--    or do  help(data=index)  for the standard data sets.


[Package topGO version 1.4.0 Index]