buildGOgraph.topology {topGO}R Documentation

buils GO graph starting from the most specific GO terms

Description

This function is building the GO graph starting from the most specific terms. The structure of the GO graph is build recursively.

Usage

buildGOgraph.topology(mostSpecificGOs, whichOnto)

Arguments

mostSpecificGOs list of GO terms
whichOnto character string specifying one of the three GO ontologies: "BP", "MF", "CC"

Value

An object of class graphNEL-class is returned. The graph is directed (the edges are from leaves to the root) and it contains all GO terms specific to whichOnto ontology.

Author(s)

Adrian Alexa

See Also

topGOdata-class, buildLevels, mapGenes2GOgraph, annFUN.hgu


[Package topGO version 1.4.0 Index]