mapGenes2GOgraph {topGO} | R Documentation |
TODO: This function builds for each node a vector containing all the genes/probes that can be annotated to that node. It starts with the nodes on the lowest level, and then pushes their genes to the parents/ancestors
mapGenes2GOgraph(dag, mostSpecificGOs, nodeLevel = buildLevels(dag, leafs2root = TRUE))
dag |
~~Describe dag here~~ |
mostSpecificGOs |
~~Describe mostSpecificGOs here~~ |
nodeLevel |
~~Describe nodeLevel here~~ |
~~ If necessary, more details than the description above ~~
An object of class graphNEL-class
is returned.
The attribute of each node in the graph contains a mapping
of the genes/probes.
Adrian Alexa
topGOdata-class
,
buildLevels
,
buildGOgraph.topology
,
annFUN.hgu
##---- Should be DIRECTLY executable !! ---- ##-- ==> Define data, use random, ##-- or do help(data=index) for the standard data sets.