readGenes.pfizer {GeneticsBase} | R Documentation |
Read genetics data files that use Pfizer's data format.
readGenes.pfizer(filename, phase=list(F), format=c("Pivot", "Listing"),...)
filename |
Name of the file in which data is stored |
phase |
see below |
format |
Format of the file to be read, one of "Pivot" or "Listing" |
... |
Additional arguments to function read.table |
The argument phase
may be:
a geneSet object
Gregory R. Warnes warnes@bst.rochester.edu and Nitin Jain nitin.jain@pfizer.com
# store where we are now here <- getwd() # move to the data directory dir <- file.path(.path.package("GeneticsBase"),"data") setwd(dir) # load Pfizer Data PfizerExample <- readGenes.pfizer("PfizerExample.txt", format="Listing") # look at the data PfizerExample # return to the original path setwd(here)