readGenes.ped {GeneticsBase} | R Documentation |
Function to read pedigree file format
readGenes.ped(filename, columns = c("family", "pid", "father", "mother", "sex"), phase = list(FALSE), quiet = FALSE, missingval = c(0), ...) readGenes.hapmap.ped(filename, ...) readGenes.fbat.ped(filename, ...) readGenes.pbat.ped(filename, ...)
filename |
Name of the file in which data is stored |
columns |
Name of the columns in the pedigree file - by default points to "family", "pid", "father", "mother", "sex" |
phase |
1. Yes/No for all (logical scalar) 2. Yes/No for each Marker (logical vector) 3. phaseObject (TBD): observation by marker by phase probabilities + definitions of contigs + probability of contigs |
quiet |
Logical: whether the progress of reading the file should be displayed. |
missingval |
Missing values (if any) to obtain missingCodes |
... |
Additional arguments to function read.table |
Gregory R. Warnes warnes@bst.rochester.edu and Nitin Jain nitin.jain@pfizer.com