LDdist-class {GeneticsBase}R Documentation

Wrapper to efficiently store the result from performing LD calculatations over sliding windows containing markers within a distance

Description

Wrapper to efficiently store the result from performing LD calculatations over sliding windows containing markers within a distance

Slots

call:
Function call used to generate this object.
D:
Linkage disequilibrium estimate
D':
Scaled linkage disequilibrium estimate
r:
Correlation coefficient
R^2:
squared correlation coefficient
n:
Number of observations
X^2:
Chi-square statistic for linkage equilibrium (i.e., D=D'=corr=0)
P-value:
Chi-square p-value for marker independence
LOD:
LOD scores

Methods

head
signature(x = "LDdist"): see head
left
signature(x = "LDdist"): see left
right
signature(x = "LDdist"): see right
show
signature(object = "LDdist"): see show
tail
signature(x = "LDdist"): see tail

Author(s)

Initial version by Gregory R. Warnes warnes@bst.rochester.edu and Nitin Jain nitin.jain@pfizer.com, enhanced to use C routines by Weiliang Qiu stwxq@channing.harvard.edu, and Ross Lazarus ross.lazarus@channing.harvard.edu


[Package GeneticsBase version 1.6.0 Index]