extractAlleles {GeneticsBase}R Documentation

functions for extracting allele levels, allele pairs, and allele codes

Description

functions for extracting allele levels, allele pairs, and allele codes

Usage

extractAlleles(object, which = c(1, 2), codes = FALSE,
allow.partial.missing = FALSE, marker, obs)

Arguments

object geneSet object
which allele pair number - 1 or 2. Default if both
codes If FALSE (default), then calleles are shown as characters, else numeric
allow.partial.missing Whether partical matching should be allowed ( default is FALSE)
marker marker names
obs Number of observations (samples) to be displayed. Default is all.

Author(s)

Gregory R. Warnes warnes@bst.rochester.edu and Nitin Jain nitin.jain@pfizer.com


[Package GeneticsBase version 1.6.0 Index]