read.phe {GeneticsBase}R Documentation

Read '.phe' phenotype file data

Description

Read '.phe' phenotype file data

Usage

read.phe(filename, columns = c("family", "pid"), quiet = FALSE, ...)
read.fbat.phe(filename, columns = c("family", "pid"), quiet = FALSE, ...)
read.pbat.phe(filename, columns = c("family", "pid"), quiet = FALSE, ...)

Arguments

filename Name of the file
columns Column names for the first two columns of a pedigree file. Defaults to "family" and "pid", where "family" is a unique identifier for each family, and "pid" is a unique identifier for each individual.
quiet Logical indicating whether progress display is suppressed, Defaults to TRUE.
... Additional (optional) parameters provided to function matrix

Value

A data frame containing the file

Author(s)

Gregory R. Warnes warnes@bst.rochester.edu and Nitin Jain nitin.jain@pfizer.com

Examples

# store where we are now
here <- getwd()

# move to the data directory
dir <- file.path(.path.package("GeneticsBase"),"data")
setwd(dir)

# load hapmap chromosome 1 data
xbat <- readGenes(gfile="xbat.ped", gformat="fbat.ped",
                  pfile="xbat.phe", pformat="fbat.phe")

# look at the data
xbat

# return to the original path
setwd(here)

[Package GeneticsBase version 1.6.0 Index]