Ideogram-class {GenomeGraphs} | R Documentation |
An ideogram is a representation of a chromosome containing the banding pattern. Note that currently ideograms are only available for hsapiens.
Objects can be created by calls of the form new("Ideogram", ...)
.
chromosome
:"character"
, representing the chromosome that needs to be drawn. E.g. 3 if chromosome 3 needs to be drawn or Y for Y chromosome.dp
:"DisplayPars"
, can be used to specify the size (default 1) of the ideogram in the final plot and to specify the highlighting colorNo methods defined with class "Ideogram" in the signature.
Steffen Durinck
http://www.stat.berkeley.edu/~steffen/
objects to See Also as gdPlot
if(interactive()){ data("dummyData", package="GenomeGraphs") minbase <- 180292097 maxbase <- 180492096 ideog <- new("Ideogram", chromosome = "3") expres <- new("GenericArray", intensity = intensity, probeStart = exonProbePos, dp = DisplayPars(color="darkred", type="point")) gdPlot(list(ideog, expres), minBase = minbase, maxBase =maxbase) }