GeneModel-class {GenomeGraphs} | R Documentation |
This class represents a custom gene model defined by exon boundaries. An example of this class could be an Affymetrix gene model used to create the Affy Exon array
Objects can be created by calls of the form new("GeneModel", ...)
.
exonStart
:"numeric"
, vector containing the start positions of the exons that are to be drawnexonEnd
:"numeric"
, vector containing the end positions of the exons that are to be drawn chromosome
:"numeric"
, chromosome namedp
:"DisplayPars"
, color of the exons and size of the exon model in the final plot No methods defined with class "GeneModel" in the signature.
Steffen Durinck
http://www.stat.berkeley.edu/~steffen/
objects to See Also as gdPlot
data("unrData", package="GenomeGraphs") affyModel = new("GeneModel", exonStart = unrPositions[,3], exonEnd = unrPositions[,4]) gdPlot(list(affyModel), minBase = min(unrPositions[,3]), maxBase=max(unrPositions[,4]))