KEGG2SCISI {PCpheno}R Documentation

Mapping between KEGG and ScISI

Description

Count the number of genes shared between a KEGG pathway and a protein complex from the ScISI interactome.

Usage

KEGG2SCISI(pw, pc, pcMat, pwMat)

Arguments

pw list of pathway names
pc list of complex names
pwMat pathway incidence matrix
pcMat complex incidence matrix

Value

matrix

Author(s)

N. LeMeur

See Also

ScISI KEGG.db

Examples

data(ScISIC)
## Mapping from Yeast genes to KEGG pathways.
KeggMat <- PWAmat("org.Sc.sgd")
KEGG2SCISI(pw = colnames(KeggMat)[1:5], pc = colnames(ScISIC)[1:5], pwMat =
KeggMat, pcMat =ScISIC)

[Package PCpheno version 1.2.1 Index]