deResult-class {PCpheno} | R Documentation |
A class for representing the result of a densityEstimate
test.
Size
:"numeric"
representing
the size of the cellular organizational unit testedObserved
:"numeric"
vector: the observed number of interactions between genes inducing a specific phenotype and each
cellular organizational unitsExpected
:
Class "testResult"
, directly.
plot
N. LeMeur
testResult
,gtResult
,densityEstimate
, plot
## apply a densityEstimate test data( DudleyPhenoM) data(ScISIC) DudleyPhenoL <- apply(DudleyPhenoM,2,function(x) names(which(x==1))) pH3 <- DudleyPhenoL[["pH3"]] perm <- 20 pH3Density <- densityEstimate(genename=pH3, interactome=ScISIC, perm=perm) ## access results pH3Density@Observed[1:5] ## use of the plot method plot(pH3Density)