LesageRaw {PCpheno} | R Documentation |
Data from Lesage et al. 2005
Description
Lesage et al. (2005) assembled a network of 316 interactions among 163
genes using deletion mutants in CHS1, CHS3, CHS4, CHS5, CHS6, CHS7 and
BNI4 in a synthetic genetic array analysis.
Usage
data(LesageRaw)
Format
LesageRaw
is a 5 column dataframe.
- SYSTEMATIC
- Systematic gene names. NOTE: All mutants are isogenic to BY4741 (MATa his3u0394 leu2u0394 met15u0394 ura3u0394) except anp1u0394 and mnn9u0394 that are isogenic to BY4742 (MATu03b1 his3u0394 leu2u0394 lys2u0394 ura3u0394).
- COMMUN
- Commun gene names.
- CFW
- Mutants showing increased, decreased or wild type sensitivity to Calcofluor white are scored s, r, or wt, respectively.
- ChitinLevel
- Chitin level (nmole GlcNAc/mg dry weight).
Values are an average of at least three
independent determinations. Values
statistically higher and lower than wild type (p < 0.01) are
highlighted in red and green, respectively.
- ChitinLevel.SD
- Standard deviation of the average of at least three
independent determinations of Chitin level.
Author(s)
N. LeMeur
Source
Lesage et al. (2005), supplementary information:
http://www.biomedcentral.com/1471-2156/6/8/suppl/S2
or ftp://genome-ftp.stanford.edu/pub/yeast/systematic_results/phenotypes
References
Lesage G, Shapiro J, Specht CA, Sdicu AM, Menard P, Hussein S, Tong AH, Boone C,
Bussey H. (2005) An interactional network of genes involved in chitin synthesis in Saccharomyces
cerevisiae.BMC Genet.6(1):8. PMID: 15715908
Examples
data(LesageRaw)
str(LesageRaw)
[Package
PCpheno version 1.2.1
Index]