categoryToEntrezBuilder {PCpheno} | R Documentation |
Return a list mapping multi-protein complexes (category) IDs to the YEAST ids annotated at the category id.
## S4 method for signature 'CoHyperGParams': categoryToEntrezBuilder(p)
p |
A subclass of HyperGParams-class |
End users should not call this directly. This method gets
called from hyperGTest
. To add support for a new
category, a new method for this generic must be defined. Its
signature should match a subclass of
HyperGParams-class
appropriate for the new
category.
A list mapping category IDs to YEAST identifiers.
S. Falcon and N. LeMeur
hyperGTest
CoHyperGParams-class
data(ScISIC) data(essglist) essential <- names(essglist) params <- new("CoHyperGParams", geneIds=essential, universeGeneIds=rownames(ScISIC), annotation="YEAST", categoryName="ScISIC", pvalueCutoff=0.01, testDirection="over") categoryToEntrezBuilder(params)[1:2]