RatioSnpSet-class {SNPchip}R Documentation

Class for high throughput SNP-level data. The assay data contains ratios of copy number.

Description

Container for high throughput SNP data for platforms that provide ratios as SNP-level summaries of copy number

Objects from the Class

Objects can be created by calls of the form new("RatioSnpSet", calls, callsConfidence, ratio, ratioConfidence, ...).

Slots

assayData:
Object of class "AssayData"
phenoData:
Object of class "AnnotatedDataFrame"
featureData:
Object of class "AnnotatedDataFrame"
experimentData:
Object of class "MIAME"
annotation:
Object of class "character"
.__classVersion__:
Object of class "Versions"

Extends

Class SnpLevelSet, directly. Class eSet, by class "SnpLevelSet", distance 2. Class VersionedBiobase, by class "SnpLevelSet", distance 3. Class Versioned, by class "SnpLevelSet", distance 4.

Methods

cnConfidence
signature(object = "RatioSnpSet"): Accessor for confidence scores for the ratios
cnConfidence<-
signature(object = "RatioSnpSet", value = "matrix"): Replacement method for ratio confidence scores
copyNumber
signature(object = "RatioSnpSet"): Accessor for ratios. See also ratio.
copyNumber<-
signature(object = "RatioSnpSet", value = "matrix"): Replacement method for ratios.
initialize
signature(.Object = "RatioSnpSet")
ratioConfidence
signature(object = "RatioSnpSet"): Accessor for confidence scores of the ratios. See also cnConfidence.

Author(s)

RS

See Also

RatioSnpSet-methods

Examples

showClass("RatioSnpSet")

[Package SNPchip version 1.4.0 Index]