ParESet-class {SNPchip}R Documentation

Class "ParESet"

Description

A class containing a list of graphical parameters for plotting objects extending SnpLevelSet

Objects from the Class

Objects can be created by calls of the form new("ParESet", layout, col.axis, cex.main, cex.axis, cex.legend, cex, cex.lab, pch, col, bg, xaxs, xaxt, yaxs, yaxt, lab, adj, bty, ann, useLayout, mar, oma, las, log, ylab, side.ylab, outer.ylab, line.ylab, cex.ylab, xlab, outer.xlab, side.xlab, cex.xlab, line.xlab, outer.axis, line.axis, main, col.centromere, border.centromere, xlim, ylim, one.ylim, add.cytoband, outer.cytoband, outer.cytoband.axis, label.cytoband, use.chromosome.size, label.chromosome, line.label.chromosome, xaxis.side, alternate.xaxis.side, mat, heights, widths, respect, firstChromosome, ...).

Slots

snpPar:
Object of class list

Methods

hmmPredict
signature(object="ParESet"): Accessor for HmmPredict instance. See also hmmPredict
initialize
signature(.Object = "ParESet")
plotSnp
ParESet, SnpLevelSet:See also plotSnp
snpPar
signature(object = "ParESet")
snpPar<-
signature(object = "ParESet")
snpset
signature(object="ParESet"): Accessor for SNP data (SnpLevelSet instance). See snpset.

Author(s)

R. Scharpf

See Also

ParSnpCallSet-class, ParSnpCopyNumberSet-class, ParSnpSet-class

Examples

showClass("ParESet")

[Package SNPchip version 1.4.0 Index]