plotCytoband {SNPchip}R Documentation

Plots cytoband for one chromosome

Description

Adds cytobands to views of chromosome copy number and genotype plots.

Usage

plotCytoband(chromosome, cytoband, cytoband.ycoords, xlim, ylim=c(0, 2),
xaxs="r", new=TRUE,
label.cytoband=TRUE, label.y=NULL, srt, cex.axis=1, outer=FALSE, taper=0.15, ...)

Arguments

chromosome character string: which chromosome to draw the cytoband
cytoband data.frame containing cytoband information
cytoband.ycoords numeric: y coordinates
xlim x-axis limits
ylim y-axis limits
xaxs see par
new logical: if TRUE, plots the cytoband on a new device
label.cytoband logical: if TRUE, labels the cytobands
label.y numeric: height (y-coordinate) for cytoband label
srt string rotation for cytoband labels. See par
cex.axis size of cytoband labels. See par
outer logical: whether to draw the labels in the outer margins. See par
taper tapering for the ends of the cytoband
... additional arguments to plot

Author(s)

Robert Scharpf and Jason Ting

See Also

plotSnp, cytoband

Examples

plotCytoband("1")

[Package SNPchip version 1.4.0 Index]