Parallelized preprocessing methods for Affymetrix Oligonucleotide Arrays


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Documentation for package ‘affyPara’ version 1.0.0

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accessFilesSF Remove distributed files from slaves
bgCorrectPara Parallelized Background Correction
bgCorrectParaSF Parallelized Background Correction
checkPartSize Internal affyPara objects / functions
combineMatrices Merge a list of split objects
computeExprSetPara Parallel generate a set of expression values
createDirSF Internal affyPara objects / functions
distributeFiles Distribute files to slaves
file.name Internal affyPara objects / functions
getAffyBatchSF Internal affyPara objects / functions
getCompIntensityMatrixSF Internal affyPara objects / functions
getCompIntensitySF Internal affyPara objects / functions
getFUNAffyBatchSF Internal affyPara objects / functions
getIntensitySF Internal affyPara objects / functions
getObjectType Internal affyPara objects / functions
hirarchicalDistSF Distribute files to slaves
initAffyBatchSF Internal affyPara objects / functions
listFilesSF Internal affyPara objects / functions
mergeAffyBatches Merge a list of split objects
normalizeAffyBatchConstantPara Parallelized scaling normalization
normalizeAffyBatchInvariantsetPara Parallelized Invariante Set normalization
normalizeAffyBatchQuantilesPara Parallelized quantile normalization
normalizeConstantParaSF1 Parallelized scaling normalization
normalizeConstantParaSF2 Parallelized scaling normalization
normalizeInvariantsetParaSF1 Parallelized Invariante Set normalization
normalizeInvariantsetParaSF2 Parallelized Invariante Set normalization
normalizeQuantilesPara Parallelized quantile normalization
normalizeQuantilesParaSF1 Parallelized quantile normalization
normalizeQuantilesParaSF2 Parallelized quantile normalization
preproPara Parallelized preprocessing
ReadHeader Internal affyPara objects / functions
removeDistributedFiles Remove distributed files from slaves
removeFilesSF Remove distributed files from slaves
rmaPara Parallelized PMA preprocessing
splitAffyBatch Functions to split objects into parts
splitFileVector Functions to split objects into parts
splitMatrix Functions to split objects into parts
writeLinesSF Internal affyPara objects / functions