buildCdfEnv.biostrings {altcdfenvs} | R Documentation |
Build CDF environment from Biostrings matchPDict results
buildCdfEnv.biostrings(apm, abatch = NULL, nrow.chip = NULL, ncol.chip = NULL, simplify = TRUE, x.colname = "x", y.colname = "y", verbose = FALSE)
apm |
AffyProbesMatch |
abatch |
AffyBatch |
nrow.chip |
number of rows for the chip type (see details) |
ncol.chip |
number of columns for the chip type (see details) |
simplify |
simplify the environment built (removing target names when there is no matching probe) |
x.colname |
column name |
y.colname |
column name |
verbose |
verbose TRUE /FALSE |
Whenever an abatch
is specified, nrow.chip
and
ncol.chip
are not needed. Specifying the an AffyBatch
in abatch
is the easiest way to specify information about the
geometry of a chip type.
An instance of class CdfEnvAffy
.