pdfChromosomesSmoothCopyNumber {beadarraySNP} | R Documentation |
Functions that help create pdf reports
pdfChromosomesSmoothCopyNumber(object, filename, ...) pdfSamplesSmoothCopyNumber(object, filename, ...) pdfChromosomeGainLossLOH(object, filename, ...)
object |
SnpSetIllumina object |
filename |
filename of output pdf file |
... |
arguments for report functions |
These functions set up and perfom reporting to pdf files.
This function is used for its side effects
Jan Oosting
reportChromosomesSmoothCopyNumber
, reportSamplesSmoothCopyNumber
,
reportChromosomeGainLossLOH
## Not run: data(chr17.260) ## Not run: data.nrm<-standardNormalization(chr17.260) ## Not run: pdfChromosomesSmoothCopyNumber(data.nrm, "Chr17.pdf", grouping=pData(data.nrm)$Group,smooth.lambda=4)