plotGoldenGate4OPA {beadarraySNP} | R Documentation |
Plots a full genome view based on 4 subsamples of Illumina Golden Gate data
plotGoldenGate4OPA(object, cn.sum = NULL, sample = 1, plotRaw = FALSE, main = NULL, interact = FALSE, ...)
object |
class SnpSetIllumina |
cn.sum |
list containing genomic states, see createCNSummary |
sample |
identifier to select the sample within the object |
plotRaw |
logical, plot raw data points |
main |
charr, Title of plot |
interact |
logical, plot should be usable for interactive copy number determination interactiveCNselect |
... |
extra arguments are formwarded to plot |
prepare interactive selection
list, see createCNSummary
Jan Oosting
segmentate, alterCN, interactiveCNselect createCNSummary