plotGoldenGate4OPA {beadarraySNP}R Documentation

Plot Golden Gate genomic view

Description

Plots a full genome view based on 4 subsamples of Illumina Golden Gate data

Usage

plotGoldenGate4OPA(object, cn.sum = NULL, sample = 1, plotRaw = FALSE, main = NULL, interact = FALSE, ...)

Arguments

object class SnpSetIllumina
cn.sum list containing genomic states, see createCNSummary
sample identifier to select the sample within the object
plotRaw logical, plot raw data points
main charr, Title of plot
interact logical, plot should be usable for interactive copy number determination interactiveCNselect
... extra arguments are formwarded to plot

Details

prepare interactive selection

Value

list, see createCNSummary

Author(s)

Jan Oosting

See Also

segmentate, alterCN, interactiveCNselect createCNSummary


[Package beadarraySNP version 1.6.0 Index]