segmentate {beadarraySNP} | R Documentation |
Use snapCGH package to perform segmentation
segmentate(object, method = c("DNACopy", "HMM", "BioHMM", "GLAD"), normalizedTo = 2, doLog = TRUE, doMerge = FALSE, subsample = "OPA")
object |
class SnpSetIllumina |
method |
char, type of segmentation |
normalizedTo |
numeric |
doLog |
logical, perform transformation before segmentation, see convert2seglist |
doMerge |
logical, perform merging of close states |
subsample |
factor |
SnpSetIllumina object with elements observed, states and predicted
set in the AssayData
slot
Jan Oosting