pdfChromosomesSmoothCopyNumber {beadarraySNP}R Documentation

reportWrappers

Description

Functions that help create pdf reports

Usage

pdfChromosomesSmoothCopyNumber(object, filename, ...)
pdfSamplesSmoothCopyNumber(object, filename, ...)
pdfChromosomeGainLossLOH(object, filename, ...)

Arguments

object SnpSetIllumina object
filename filename of output pdf file
... arguments for report functions

Details

These functions set up and perfom reporting to pdf files.

Value

This function is used for its side effects

Author(s)

Jan Oosting

See Also

reportChromosomesSmoothCopyNumber, reportSamplesSmoothCopyNumber, reportChromosomeGainLossLOH

Examples

  ## Not run: data(chr17.260)
  ## Not run: data.nrm<-standardNormalization(chr17.260)
  ## Not run: pdfChromosomesSmoothCopyNumber(data.nrm, "Chr17.pdf", grouping=pData(data.nrm)$Group,smooth.lambda=4)

[Package beadarraySNP version 1.6.0 Index]