flowClust-package {flowClust}R Documentation

Clustering for Flow Cytometry

Description

Robust model-based clustering using a t mixture model with Box-Cox transformation.

Details

Package: flowClust
Type: Package
Version: 1.0.0
Depends: R(>= 2.5.0), methods, mnormt, mclust, ellipse, flowCore
Collate: SetClasses.R SetMethods.R plot.R flowClust.R SimulateMixture.R
biocViews: Clustering, Statistics, Visualization
License: Artistic-2.0
Built: R 2.6.1; universal-apple-darwin8.10.1; 2008-03-26 20:54:42; unix

Index

box
Box-Cox Transformation
density,flowClust-method
Grid of Density Values for the Fitted t Mixture Model with Box-Cox Transformation
dmvt
Density of the Multivariate t Distribution
flowClust
Robust Model-based Clustering for Flow Cytometry
hist,flowClust-method
1-D Density Plot (Histogram) of Clustering Results
Map,flowClust-method
Cluster Assignment Based on Clustering Results
plot,flowClust-method
Scatterplot of Clustering Results
plot,flowDens-method
Contour or Image Plot of Clustering Results
plot,flowFrame,tmixFilterResult-method
Scatterplot / 1-D Density Plot of Filtering (Clustering) Results
posterior
Various Functions for Retrieving Information from Clustering Results
rbox
Reverse Box-Cox Transformation
ruleOutliers,flowClust-method
Showing or Modifying the Rule used to Identify Outliers
show,flowClust-method
Show Method for flowClust / tmixFilterResult Object
show,tmixFilter-method
Show Method for tmixFilter Object
SimulateMixture
Random Generation from a t Mixture Model
split,flowClust-method
Splitting Data Based on Clustering Results
Subset,flowClust-method
Subsetting Data Based on Clustering Results
summary,flowClust-method
Summary Method for flowClust Object
tmixFilter
Creating Filters and Filtering Flow Cytometry Data

Note

Further information is available in the vignette.

Author(s)

Raphael Gottardo <raph@stat.ubc.ca>, Kenneth Lo <c.lo@stat.ubc.ca>

Maintainer: Raphael Gottardo <raph@stat.ubc.ca>

References

Lo, K., Brinkman, R. R. and Gottardo, R. (2008) Automated Gating of Flow Cytometry Data via Robust Model-based Clustering. Cytometry A 73, 321-332.


[Package flowClust version 1.3.2 Index]