sampleProfiles {goProfiles}R Documentation

Sample Profiles computed on some datasets in the package

Description

This dataset contains some basic and expanded sample profiles computed on some of the datasets in the package. They are intended to be used in examples of profile manipulation, without having to re=compute the profiles each time the example is checked. The prefix of the object indicates if it is a 'basic' or an 'expanded' profile, whereas the name can be clearly associated to some of the datasets available in the package.

  • basicWelsh01 Basic (contracted) profile made from Welsh01EntrezIds dataset with default parameters.
  • basicSingh01 Basic (contracted) profile made from Singh01EntrezIds dataset with default parameters.
  • basicCD4 Basic (contracted) profile made from CD4LLids dataset with default parameters.
  • basicHugo Basic (contracted) profile made from hugoIds dataset with default parameters.
  • expandedWelsh01 Expanded profile made from Welsh01EntrezIds dataset with default parameters.
  • expandedSingh01 Expanded profile made from Singh01EntrezIds dataset with default parameters.
  • commonExpandedWelsh01Singh01 Expanded profile made from common genes in Welsh01EntrezIds and Singh01EntrezIds dataset with default parameters.
  • expandedCD4 Expanded profile made from CD4LLids dataset with default parameters.
  • expandedHugo Expanded profile made from hugoIds dataset with default parameters.

    Usage

    data(sampleProfiles)

    Examples

    data(sampleProfiles)
    

    [Package goProfiles version 1.2.0 Index]