\HeaderA{activeNetScoreHTML}{Save HTML file with scores and p-values from functional gene
networks classification}{activeNetScoreHTML}
\keyword{methods}{activeNetScoreHTML}
\begin{Description}\relax
This function takes an object of class \code{\LinkA{maigesActNet}{maigesActNet}},
that is generated using the function \code{\LinkA{activeNet}{activeNet}} to do
functional classification of gene groups, and save an HTML file with
global score for genes separated by gene groups (modules).
\end{Description}
\begin{Usage}
\begin{verbatim}
activeNetScoreHTML(mod=NULL, dir="./", fileSave="scores")
\end{verbatim}
\end{Usage}
\begin{Arguments}
\begin{ldescription}
\item[\code{mod}] object of class \code{\LinkA{maigesActNet}{maigesActNet}}, resulted from
functional classification of gene networks.
\item[\code{dir}] character string giving the folder to save the file.
\item[\code{fileSave}] string giving the file name. You don't need to put
the extension 'html', it will be put automatically.
\end{ldescription}
\end{Arguments}
\begin{Value}
This function generates an HTML file and don't return any R value or object.
\end{Value}
\begin{Author}\relax
Gustavo H. Esteves <\email{gesteves@vision.ime.usp.br}>
\end{Author}
\begin{SeeAlso}\relax
\code{\LinkA{plot.maigesActNet}{plot.maigesActNet}}, \code{\LinkA{activeNet}{activeNet}}
\end{SeeAlso}
\begin{Examples}
\begin{ExampleCode}
## Loading the dataset
data(gastro)

## Doing functional classification of gene networks for sample Label
## given by 'Tissue'
gastro.net = activeNet(gastro.summ, sLabelID="Tissue")

activeNetScoreHTML(gastro.net)
\end{ExampleCode}
\end{Examples}

