maigesActNet-class        package:maigesPack        R Documentation

_m_a_i_g_e_s_A_c_t_N_e_t _c_l_a_s_s, _s_t_o_r_e _r_e_s_u_l_t_s _o_f _f_u_n_c_t_i_o_n_a_l _c_l_a_s_s_i_f_i_c_a_t_i_o_n _o_f _g_e_n_e
_n_e_t_w_o_r_k_s

_D_e_s_c_r_i_p_t_i_o_n:

     This class defines a structure to store the results of functional
     classification of gene networks that was proposed and implemented
     in this package. Objects of this type are generated by calling the
     function 'activeNet'.

_D_e_t_a_i_l_s:

     Objects of this class are produced by calling the function
     'activeNet' over an object of class 'maiges' to search for gene
     networks that present evidence of activation in different
     biological types. This is done according to the model proposed in
     the PhD thesis of the author of this package.

_S_l_o_t_s:


     '_s_c_o_r_e_s': numerical matrix storing the results of a statistic to
          test the functional activation of the networks studied. The
          rows and columns of the matrix represents the biological
          sample types and the networks, respectively.

     '_P_v_a_l_u_e_s': numerical matrix storing the p-values of the
          statistical test. As in the previous slot, matrix rows and
          columns  represents the biological sample types and the
          networks, respectively.

     '_D_a_t_e': character string giving the date and time that the object
          was generated.

     '_V._i_n_f_o': list containg three characters. The first one is a
          string containing the R version used when the object was
          created. The second is a char vector with base packages and
          the last one is another char vector with additional packages
          and version numbers.

_M_e_t_h_o_d_s:


     _i_m_a_g_e 'signature(x = 'maigesActNet')': image method for
          'maigesActNet' class. Display colour representation of the
          statistics or p-values of gene networks.

     _p_l_o_t 'signature(x = 'maigesActNet')': plot method for
          'maigesActNet' class. Do the same as image.

     _p_r_i_n_t 'signature(x = 'maigesActNet')': print method for
          'maigesActNet' class.

     _s_h_o_w 'signature(x = 'maigesActNet')': show method for
          'maigesActNet' class.

     _s_u_m_m_a_r_y 'signature(x = 'maigesActNet')': summary method for
          'maigesActNet' class.

_A_u_t_h_o_r(_s):

     Gustavo H. Esteves <gesteves@vision.ime.usp.br>

_S_e_e _A_l_s_o:

     'activeNet'.

