maigesDE-class {maigesPack} | R Documentation |
This class defines a structure to store the results from differential
expression analysis. This type of analysis can be done using the
functions deGenes2by2Ttest
,
deGenes2by2Wilcox
and deGenes2by2BootT
for analysis between two biological sample types, or function
deGenesANOVA
, for analysis between more than two sample
types using ANOVA models.
Objects of this class are produced by calling the functions deGenes2by2Ttest
,
deGenes2by2Wilcox
and deGenes2by2BootT
over an object of class maiges
or by calling the
function deGenesANOVA
over an object of class
maigesANOVA
fitting an ANOVA model to the microarray dataset.
GeneInfo
:SampleInfo
:GeneInfo
above, but containing information about the biological sample
types used in the analysis.fold
:stat
:p.value
:factors
:test
:Date
:V.info
:signature(x = 'maigesDE')
: plot method for
maigesDE
class. Display volcano plots.signature(x = 'maigesDE')
: print method for
maigesDE
class.signature(x = 'maigesDE')
: show method for
maigesDE
class.signature(x = 'maigesDE')
: summary method for
maigesDE
class.Gustavo H. Esteves <gesteves@vision.ime.usp.br>
deGenes2by2Ttest
, deGenes2by2Wilcox
,
deGenes2by2BootT
, deGenesANOVA
.