normOLIN {maigesPack} | R Documentation |
This function loads a maigesRaw
object and normalise it
using methods OLIN or OSLIM.
normOLIN(obj=NULL, ...)
obj |
object of type maigesRaw to be normalised. |
... |
additional parameters for function olin . |
This function for normalisation is entirely based on function
olin
from OLIN package. This function
implements the methods OLIN and OSLIM, proposed by Futschich and
Crompton (2004). See help page for this function to discover how to
set the parameters.
This function returns a maiges
object.
Gustavo H. Esteves <gesteves@vision.ime.usp.br>
Futschik, M. and Crompton, T. Model selection and efficiency testing for normalization of cDNA microarray data, Genome Biology, 5, R60, 2004 (http://genomebiology.com/2004/5/8/R60).
olin
from OLIN package.
## Loading the dataset data(gastro) ## Doing the OLIN normalization. Pay attention because, this methods are ## very time consuming! ## Not run: gastro.norm = normOLIN(gastro.raw2) ## Without scale adjustment gastro.norm = normOLIN(gastro.raw2, OSLIN=TRUE) ## With scale adj ## End(Not run)