\HeaderA{[-method}{Sub-setting methods for maiges objects}{[.Rdash.method}
\aliasA{[}{[-method}{[}
\aliasA{[,maiges-method}{[-method}{[,maiges.Rdash.method}
\aliasA{[,maigesANOVA-method}{[-method}{[,maigesANOVA.Rdash.method}
\aliasA{[,maigesPreRaw-method}{[-method}{[,maigesPreRaw.Rdash.method}
\aliasA{[,maigesRaw-method}{[-method}{[,maigesRaw.Rdash.method}
\keyword{methods}{[-method}
\begin{Description}\relax
Sub-setting methods were defined for the classes presented
in this package, \code{\LinkA{maiges}{maiges}}, \code{\LinkA{maigesANOVA}{maigesANOVA}}, 
\code{\LinkA{maigesRaw}{maigesRaw}} and \code{\LinkA{maigesPreRaw}{maigesPreRaw}}. These methods
create instances of the given class, for a subset of spots and/or
arrays in a batch.
\end{Description}
\begin{Section}{Methods}
\describe{
\item[x = ANY] generic method.
\item[x = maiges] \code{x[i, j]} extract object of class
\code{\LinkA{maiges}{maiges}} for spots with indexes i and samples with
indexes j.
\item[x = maigesANOVA] \code{x[i, j]} extract object of class
\code{\LinkA{maigesANOVA}{maigesANOVA}} for spots with indexes i and samples
with indexes j.
\item[x = maigesRaw] \code{x[i, j]} extract object of class
\code{\LinkA{maigesRaw}{maigesRaw}} for spots with indexes i and arrays with
indexes j.
\item[x = maigesPreRaw] \code{x[i, j]} extract object of class
\code{\LinkA{maigesPreRaw}{maigesPreRaw}} for spots with indexes i and arrays with
indexes j.
}
\end{Section}
\begin{SeeAlso}\relax
\code{\LinkA{maiges}{maiges}}, \code{\LinkA{maigesANOVA}{maigesANOVA}},
\code{\LinkA{maigesRaw}{maigesRaw}} and \code{\LinkA{maigesPreRaw}{maigesPreRaw}}.
\end{SeeAlso}
\begin{Examples}
\begin{ExampleCode}
## Loading the dataset
data(gastro)

gastro[1:10,]
gastro[1,1]

gastro.raw[rep(TRUE, 15),]

gastro.norm[c(1,4,6), c(10, 18)]
\end{ExampleCode}
\end{Examples}

