\HeaderA{activeModScoreHTML}{Save HTML file with global gene scores from functional gene
groups classification}{activeModScoreHTML}
\keyword{methods}{activeModScoreHTML}
\begin{Description}\relax
This function takes an object of class \code{\LinkA{maigesActMod}{maigesActMod}},
that is generated using the function \code{\LinkA{activeMod}{activeMod}} to do
functional classification of gene groups, and save an HTML file with
global score for genes separated by gene groups (modules).
\end{Description}
\begin{Usage}
\begin{verbatim}
activeModScoreHTML(mod=NULL, dir="./", fileSave="scores")
\end{verbatim}
\end{Usage}
\begin{Arguments}
\begin{ldescription}
\item[\code{mod}] object of class \code{\LinkA{maigesActMod}{maigesActMod}}, resulted from
functional classification of gene groups.
\item[\code{dir}] character string giving the folder to save the file.
\item[\code{fileSave}] string giving the file name. You don't need to put
the extension 'html', it will be put automatically.
\end{ldescription}
\end{Arguments}
\begin{Value}
This function generates an HTML file and don't return any R value or object.
\end{Value}
\begin{Author}\relax
Gustavo H. Esteves <\email{gesteves@vision.ime.usp.br}>
\end{Author}
\begin{SeeAlso}\relax
\code{\LinkA{plot.maigesActMod}{plot.maigesActMod}}, \code{\LinkA{activeMod}{activeMod}}
\end{SeeAlso}
\begin{Examples}
\begin{ExampleCode}
## Loading a little dataset
data(gastro)

## Doing functional classification of gene groups for 'Tissue' sample label
gastro.mod = activeMod(gastro.summ, sLabelID="Tissue", cutExp=1,
  cutPhiper=0.05)

activeModScoreHTML(gastro.mod)
\end{ExampleCode}
\end{Examples}

