maigesANOVA-class         package:maigesPack         R Documentation

_m_a_i_g_e_s_A_N_O_V_A _c_l_a_s_s, _e_x_t_e_n_d _m_a_i_g_e_s _c_l_a_s_s _t_o _f_i_t _A_N_O_V_A _m_o_d_e_l_s

_D_e_s_c_r_i_p_t_i_o_n:

     This class extends the class 'maiges' adding two numerical
     matrices to fit ANOVA models and estimate parameters of interest.
     Additional to the existing slots of class 'maiges' this class
     defines other two, described in _Slots_ section.

_D_e_t_a_i_l_s:

     This class of objects is exactly the same as 'maiges' with the two
     slots described in _Slots_ section. Objects of this class are
     generated from 'maiges' class using the function 'designANOVA'.
     So, it is possible to fit the model and estimate parameters or
     contrasts using the function 'deGenesANOVA'.

_S_l_o_t_s:


     '_D_m_a_t_r_i_x': numeric matrix describing the design matrix to fit an
          ANOVA model.

     '_C_m_a_t_r_i_x': numeric matrix describing the contrasts matrix to
          estimate parameters and contrasts of interest, after the
          model fitting.

_M_e_t_h_o_d_s:


     [ 'signature(x = 'maigesANOVA')': sub-setting operator for spots
          on the array or arrays in the batch, ensures that all slots
          are subset properly.

     _b_o_x_p_l_o_t 'signature(x = 'maigesANOVA')': boxplot method for
          'maigesANOVA' class. Display boxplots of the slides and print
          tip groups using package _marray_ or boxplots of one gene
          previously defined.

     _d_i_m 'signature(x = 'maigesANOVA', value = 'numeric')': get the
          dimensions of the object, numeric vector of length two.

     _i_m_a_g_e 'signature(x = 'maigesANOVA')': image method for
          'maigesANOVA' class. Display colour representation of the
          slides using package _marray_.

     _p_l_o_t 'signature(x = 'maigesANOVA')': plot method for 'maigesANOVA'
          class. Display 'MA' plots.

     _p_r_i_n_t 'signature(x = 'maigesANOVA')': print method for
          'maigesANOVA' class.

     _s_h_o_w 'signature(x = 'maigesANOVA')': show method for 'maigesANOVA'
          class.

     _s_u_m_m_a_r_y 'signature(x = 'maigesANOVA')': summary method for
          'maigesANOVA' class.

_A_u_t_h_o_r(_s):

     Gustavo H. Esteves <gesteves@vision.ime.usp.br>

_S_e_e _A_l_s_o:

     'designANOVA', 'deGenesANOVA'.

