activeModScoreHTML        package:maigesPack        R Documentation

_S_a_v_e _H_T_M_L _f_i_l_e _w_i_t_h _g_l_o_b_a_l _g_e_n_e _s_c_o_r_e_s _f_r_o_m _f_u_n_c_t_i_o_n_a_l _g_e_n_e
_g_r_o_u_p_s _c_l_a_s_s_i_f_i_c_a_t_i_o_n

_D_e_s_c_r_i_p_t_i_o_n:

     This function takes an object of class 'maigesActMod', that is
     generated using the function 'activeMod' to do functional
     classification of gene groups, and save an HTML file with global
     score for genes separated by gene groups (modules).

_U_s_a_g_e:

     activeModScoreHTML(mod=NULL, dir="./", fileSave="scores")

_A_r_g_u_m_e_n_t_s:

     mod: object of class 'maigesActMod', resulted from functional
          classification of gene groups.

     dir: character string giving the folder to save the file.

fileSave: string giving the file name. You don't need to put the
          extension 'html', it will be put automatically.

_V_a_l_u_e:

     This function generates an HTML file and don't return any R value
     or object.

_A_u_t_h_o_r(_s):

     Gustavo H. Esteves <gesteves@vision.ime.usp.br>

_S_e_e _A_l_s_o:

     'plot.maigesActMod', 'activeMod'

_E_x_a_m_p_l_e_s:

     ## Loading a little dataset
     data(gastro)

     ## Doing functional classification of gene groups for 'Tissue' sample label
     gastro.mod = activeMod(gastro.summ, sLabelID="Tissue", cutExp=1,
       cutPhiper=0.05)

     activeModScoreHTML(gastro.mod)

