createMaigesRaw {maigesPack} | R Documentation |
Function to create objects of class maigesRaw
from
objects of class maigesPreRaw
.
createMaigesRaw(PreRaw, greenDataField, greenBackDataField, redDataField, redBackDataField, flagDataField, gLabelGrp, gLabelPath)
PreRaw |
object of class maigesPreRaw to be used to
generate another object of class maigesRaw . |
greenDataField |
character string specifying the name of the
Data slot from PreRaw that will be used to read the
spot intensity values for green channel. |
greenBackDataField |
character string specifying the name of the
Data slot from PreRaw that will be used to read the
background intensity values for green channel. |
redDataField |
character string specifying the name of the
Data slot from PreRaw that will be used to read the
spot intensity values for red channel. |
redBackDataField |
character string specifying the name of the
Data slot from PreRaw that will be used to read the
background intensity values for red channel. |
flagDataField |
character string specifying the name of the
Data slot from PreRaw that will be used to read the
flag values. |
gLabelGrp |
character string with the gene label to match gene groups. |
gLabelPath |
character string with the gene label to match gene networks. |
The result of this function is an object of class maigesRaw
.
Gustavo H. Esteves <gesteves@vision.ime.usp.br>
## Load a little dataset data(gastro) ## See the object gastro ## Transform gastro into a maigesRaw object gastro.raw = createMaigesRaw(gastro, greenDataField="Ch1.Mean", greenBackDataField="Ch1.B.Mean", redDataField="Ch2.Mean", redBackDataField="Ch2.B.Mean", flagDataField="Flags", gLabelGrp="GeneName", gLabelPath="GeneName")