coloredGraph-class | Class "coloredGraph" |
colorNodes | attach node coloring information to a graphNEL instance |
colorNodes,graphNEL,numeric,character,function-method | attach node coloring information to a graphNEL instance |
graphcMAP | obtain a graph object corresponding to a cMAP pathway |
plot,coloredGraph-method | Class "coloredGraph" |
plot,pwayGraph-method | Class "pwayGraph" - extension to graphNEL for pathway rendering |
plotExGraph | plot a gene network, coloring nodes according to relative expression values |
pwayGraph-class | Class "pwayGraph" - extension to graphNEL for pathway rendering |
pwayRendAttrs | Class "coloredGraph" |
reduceES | collapse the assay values in an ExpressionSet to a set of specified genes, using a statistic when multiple probes map to a given gene |
rendercMAPPathway | Render pathways from cMAP |