graphcMAP {pathRender}R Documentation

obtain a graph object corresponding to a cMAP pathway

Description

obtain a graph object corresponding to a cMAP pathway

Usage

graphcMAP(pname)

Arguments

pname character token identifying a KEGG or cMAP pathway

Details

reuses code from pathRender but emits a graphNEL-class instance with some additional information for rendering

Value

an instance of pwayGraph, which extends graphNEL

Author(s)

Vince Carey <stvjc@channing.harvard.edu>

Examples

G1 = graphcMAP("p53pathway")
G1
nodes(G1)
if (require(Rgraphviz)) plot(G1)

[Package pathRender version 1.8.1 Index]