cViz {ChromoViz}R Documentation

Main function

Description

ChromoViz main function

Usage

cViz(feature, bandPosFile, refSp = "human")

Arguments

feature gene expression
bandPosFile band position
refSp the name of species

Details

A wrapper html report, index.html, is generated.

Value

An index.html is generated incorporating individual chromosome html with SVG figures.

Author(s)

Jihoon Kim <jihoon@stat.wisc.edu>

References

Kim et al. ChromoViz: multimodal visualization of gene expression data onto chromosome using scalable vector graphics, Bioinformatics, May 1:1191-2, 2004

Examples

#library( ChromoViz )
#
#Onto human chromosome
#data( exprStemcell )
#data( humanBand )
#SET OUTPUT DIRECTORY  ex>  setwd("C:\temp") 
#cViz( exprStemcell, humanBand, refSp="human")

[Package ChromoViz version 1.2.0 Index]