affySpikeIn |
Gene expression dataset from Affymetrix Spike-in Experiments |
aggregateFun |
Aggregate Statistical Functions for DEDS |
ApoA1 |
Gene expression dataset from the ApoA1 Experiment |
comp.adjp |
Computing permutation based step-down maxT adjusted p values for each row of a matrix |
comp.B |
Computing B-statistics for Differential Expression |
comp.ebayes |
Computing Empirical Bayes Statistics for Differential Expression |
comp.F |
Computing F-statistic for Differential Expression |
comp.FC |
Computing Fold Change for Differential Expression |
comp.fdr |
Computing permutation based q values controlling false discovery rate for each row of a matrix |
comp.modF |
Computing Moderated t-statistics for Differential Expression |
comp.modt |
Computing Moderated t-statistics for Differential Expression |
comp.SAM |
Computing SAM Statistics for Differential Expression |
comp.stat |
Computing Test Statistics for Differential Expression |
comp.t |
Computing One and Two Sample t-statistic for Differential Expression |
comp.unadjp |
Computing permutation based unadjusted p values for each row of a matrix |
DEDS |
DEDS Result List - class |
DEDS-class |
DEDS Result List - class |
deds.chooseTest |
Selection of the Most Common Statistics for Differential Expression |
deds.genExtra |
Generating Extra Parameters for Test Statistics Functions for Differential Expression |
deds.pval |
Differential Expression via Distance Summary of p Values from Multiple Models |
deds.stat |
Differentail Expression via Distance Summary of Multiple Statistics |
deds.stat.linkC |
Differentail Expression via Distance Summary of Multiple Statistics |
hist |
Histogram for DEDS Objects |
hist-methods |
Histogram for DEDS Objects |
hist.DEDS |
Histogram for DEDS Objects |
pairs |
Pairs Plot for DEDS Objects |
pairs-methods |
Pairs Plot for DEDS Objects |
pairs.DEDS |
Pairs Plot for DEDS Objects |
qqnorm |
Normal Q-Q Plot for DEDS Objects |
qqnorm-methods |
Normal Q-Q Plot for DEDS Objects |
qqnorm.DEDS |
Normal Q-Q Plot for DEDS Objects |
spikedgene |
Gene expression dataset from Affymetrix Spike-in Experiments |
topgenes |
Table of Top Genes from DEDS |