ParamFromIndex {GeneR} | R Documentation |
Extract parameters from an index file
Description
Gets values from an index file to a specific access number
Usage
paramFromIndex(accn, indexpath)
Arguments
accn |
Access number (name) of sequence |
indexpath |
Name of index file |
Value
A list, with values:
accno |
acces number |
indexpath |
index file |
beginFeatures |
Position of the begining of features |
beginSeq |
Position of the begining of sequence |
size |
Length of sequence (in the file) or -1 if error |
See Also
readSeq
,sizeSeqEmbl
Examples
seqNcbi("BY608190",file="BY608190.fa")
makeIndex("BY608190.fa",type='F')
paramFromIndex("gi|26943372|gb|BY608190.1|BY608190","BY608190.fa.ix")
[Package
GeneR version 1.4.2
Index]