bindev | internally functions used by PLR. |
class.factor.format | A function for creating a factor from the phenoData slot of an exprSet |
ClassifierBuild | Building a classifier as a combination of preprocessing and classification method |
cluster.kmeans.mean | Variable selection and cluster functions |
GPLS.wrap | Wrapper function for different classification methods |
identity | Variable selection and cluster functions |
important.variable.names | Writing tables with variable information |
intersectList | A function for creating a all possible intersects for a list of sets. |
MCRconfusion | Summary tables for MCRestimate objects |
MCRestimate | Estimation of misclassification error by cross-validation |
MCRestimateMerge | Merging objects of class MCRestimate |
MCRwrongsamples | Summary tables for MCRestimate objects |
PAM.wrap | Wrapper function for different classification methods |
plot.MCRestimate | Plot method for a objects of class MCRestimate |
PLR | A function which performs penalised logistic regression classification for two groups |
plr.fit | internally functions used by PLR. |
PLR.wrap | Wrapper function for different classification methods |
predict.PLR | A function which performs penalised logistic regression classification for two groups |
print.MCRestimate | Estimation of misclassification error by cross-validation |
replace.NA | Replaces in a given numeric matrix NA values per row or per column. |
RF.wrap | Wrapper function for different classification methods |
select.NA.elements | Selects NA values of a given numeric matrix |
SVM.OVA.wrap | SVM with 'One-Versus-All' multiclass approach |
SVM.wrap | Wrapper function for different classification methods |
varSel.AUC | Variable selection and cluster functions |
varSel.green.int.max.eSRG | Variable selection and cluster functions |
varSel.green.int.sec.eSRG | Variable selection and cluster functions |
varSel.highest.t.stat | Variable selection and cluster functions |
varSel.highest.var | Variable selection and cluster functions |
varSel.impute.NA | Variable selection and cluster functions |
varSel.removeManyNA | Variable selection and cluster functions |
varSel.svm.rfe | Variable selection and cluster functions |
whatiscorrect | internally used function |