Merge Maid


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Documentation for package `MergeMaid' version 2.2.0

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AverageDuplicates Merge gene expression data sets
check Merge gene expression data sets
check.length Class mergeCoeff, a class for storing regression coefficients.
coeff Class mergeCoeff, a class for storing regression coefficients.
coeff,mergeCoeff-method Class mergeCoeff, a class for storing regression coefficients.
coeff<-,mergeCoeff-method Class mergeCoeff, a class for storing regression coefficients.
cors Class mergeCor, a class for storing data relevant to integrative correlation coefficients.
cors,mergeCor-method Class mergeCor, a class for storing data relevant to integrative correlation coefficients.
exprs,mergeExprSet-method Class mergeExprSet, a class for merged microarray data, and methods for processing them
exprs<-,mergeExprSet-method Class mergeExprSet, a class for merged microarray data, and methods for processing them
geneNames,mergeExprSet-method Class mergeExprSet, a class for merged microarray data, and methods for processing them
geneNames<-,mergeExprSet-method Class mergeExprSet, a class for merged microarray data, and methods for processing them
geneStudy Class mergeExprSet, a class for merged microarray data, and methods for processing them
geneStudy,mergeExprSet-method Class mergeExprSet, a class for merged microarray data, and methods for processing them
geneStudy<-,mergeExprSet-method Class mergeExprSet, a class for merged microarray data, and methods for processing them
hist,mergeCor-method Class mergeCor, a class for storing data relevant to integrative correlation coefficients.
intCor Correlation of Correlations
intCor,mergeExprSet-method Class mergeExprSet, a class for merged microarray data, and methods for processing them
intcorDens plot of density functions of integrative correlations
intcorDens,mergeExprSet-method Class mergeExprSet, a class for merged microarray data, and methods for processing them
integrative.cors Class mergeCor, a class for storing data relevant to integrative correlation coefficients.
integrative.cors,mergeCor-method Class mergeCor, a class for storing data relevant to integrative correlation coefficients.
intersection exprSet with all common genes in a mergeExprSet
intersection,mergeExprSet-method Class mergeExprSet, a class for merged microarray data, and methods for processing them
length,mergeExprSet-method Class mergeExprSet, a class for merged microarray data, and methods for processing them
mergeCoeff Class mergeCoeff, a class for storing regression coefficients.
mergeCoeff-class Class mergeCoeff, a class for storing regression coefficients.
mergeCor Class mergeCor, a class for storing data relevant to integrative correlation coefficients.
mergeCor-class Class mergeCor, a class for storing data relevant to integrative correlation coefficients.
mergeData MergeMaid instance data for merging
mergeExprs Merge gene expression data sets
mergeExprSet Class mergeExprSet, a class for merged microarray data, and methods for processing them
mergeExprSet-class Class mergeExprSet, a class for merged microarray data, and methods for processing them
mergeget Merge gene expression data sets
modelOutcome Compare regression coefficients across studies
modelOutcome,mergeExprSet-method Class mergeExprSet, a class for merged microarray data, and methods for processing them
names,mergeExprSet-method Class mergeExprSet, a class for merged microarray data, and methods for processing them
names<-,mergeExprSet-method Class mergeExprSet, a class for merged microarray data, and methods for processing them
notes,mergeExprSet-method Class mergeExprSet, a class for merged microarray data, and methods for processing them
notes<-,mergeExprSet-method Class mergeExprSet, a class for merged microarray data, and methods for processing them
pairwise.cors Class mergeCor, a class for storing data relevant to integrative correlation coefficients.
pairwise.cors,mergeCor-method Class mergeCor, a class for storing data relevant to integrative correlation coefficients.
phenoData,mergeExprSet-method Class mergeExprSet, a class for merged microarray data, and methods for processing them
phenoData<-,mergeExprSet-method Class mergeExprSet, a class for merged microarray data, and methods for processing them
plot,list-method Class mergeCor, a class for storing data relevant to integrative correlation coefficients.
plot,mergeCor-method Class mergeCor, a class for storing data relevant to integrative correlation coefficients.
sample1 MergeMaid instance data for merging
sample2 MergeMaid instance data for merging
sample3 MergeMaid instance data for merging
stdcoeff Class mergeCoeff, a class for storing regression coefficients.
stdcoeff,mergeCoeff-method Class mergeCoeff, a class for storing regression coefficients.
stdcoeff<-,mergeCoeff-method Class mergeCoeff, a class for storing regression coefficients.
subsetmES Class mergeExprSet, a class for merged microarray data, and methods for processing them
summary,mergeExprSet-method Class mergeExprSet, a class for merged microarray data, and methods for processing them
zscore Class mergeCoeff, a class for storing regression coefficients.
zscore,mergeCoeff-method Class mergeCoeff, a class for storing regression coefficients.
zscore<-,mergeCoeff-method Class mergeCoeff, a class for storing regression coefficients.
[,mergeExprSet-method Class mergeExprSet, a class for merged microarray data, and methods for processing them