apEX |
Example data set for apComplex package |
apEXG |
Example data set for apComplex package |
bhmaxSubgraph |
Find maximal BH-complete subgraph |
findComplexes |
Estimate a Protein Complex Membership Graph (PCMG) using protein complex comembership data from AP-MS technology |
HMSPCI |
High-Throughput Mass Spectromic Protein Complex Identification (HMS-PCI) Data from Ho, et al. (2002) |
HMSPCIgraph |
High-Throughput Mass Spectromic Protein Complex Identification (HMS-PCI) Data from Ho, et al. (2002) |
LCdelta |
Computes change in LxC measure |
MBMEcHMSPCI |
HMSPCI data complex estimates |
MBMEcTAP |
TAP data complex estimates |
mergeComplexes |
Iteratively combine columns in initial PCMG estimate |
reduceMat |
Remove matrix columns |
SBMHcHMSPCI |
HMSPCI data complex estimates |
SBMHcTAP |
TAP data complex estimates |
sortComplexes |
Sort complex estimates |
TAP |
Tandem Affinity Purification (TAP) Data from Gavin et al. (2002) |
TAPgraph |
Tandem Affinity Purification (TAP) Data from Gavin et al. (2002) |
UnRBBcHMSPCI |
HMSPCI data complex estimates |
UnRBBcTAP |
TAP data complex estimates |
vecInMat |
Vector in Matrix |
whichVecInMat |
Vector in Matrix |
yTAP |
yTAP Complexes published Gavin, et al. (2002). |