plotMA3by2 {limma} | R Documentation |
Write MA-plots to files in PNG format, six plots to a file in a 3 by 2 grid arrangement.
plotMA3by2(MA, prefix="MA", main=colnames(MA), zero.weights=FALSE, common.lim=TRUE, ...)
MA |
an MAList or RGList object, or any list with components M containing log-ratios and A containing average intensities |
prefix |
character string giving prefix to attach to file names |
main |
character vector giving titles for plots |
zero.weights |
logical, should points with non-positive weights be plotted |
common.lim |
logical, should all plots on a page use the same axis limits |
... |
any other arguments are passed to plotMA |
This function writes plots in PNG format in an arrangement optimized for A4-sized paper.
No value is returned, but one or more files are written to the working directory.
The number of files is determined by the number of columns of MA
.
Gordon Smyth
An overview of diagnostic functions available in LIMMA is given in 09.Diagnostics.