plot.MACATevalScoring {macat} | R Documentation |
Function plots scores, 0.025 and 0.975 quantiles of the permuted scores (grey lines), sliding average score (red line), highlighted regions (yellow dotted) where the score exides the quantiles, along chromosome.
## S3 method for class 'MACATevalScoring': plot(x, output = "x11", HTMLfilename = NULL, mytitle = NULL, new.device = TRUE, ...)
x |
MACATevalScoring object. |
output |
plot "x11" or create a "html" -file with further information. HTML-page will open automatically. |
HTMLfilename |
HTML-filename, default:Results<CHOMOSOME>_<CLASS>.html |
mytitle |
Title of HTML-page, default: “Results of class <CLASS> on chromosome <CHROMOSOME>” |
new.device |
if FALSE: Possibility to plot several plots in one device |
... |
further arguments passed on to generic function plot |
One can create a HTML-page on-the-fly if argument output='html'. The HTML-page provids informations about highlighted regions in the plot. Furthermore there are clickable LocusIDs for further analysis.
MACAT development team
# see function 'evalScoring' for an example