"plot-methods" {rflowcyt}R Documentation

Graphical representation of an object

Description

The default action is a graphical plot of the object.

Methods

x = "ANY", y = "ANY"
A scatterplot or other graphical representation is produced.
x = "FCS", y = "missing"
The default action is contour-image pairs plotting for all the column variables.
x = "FCS", y = "missing", image.parallel.plot=FALSE, joint=TRUE, ...

An optional image parallel coordinates plotting (either marginal or joint) for each row/cell across all column variables can also be displayed.

The optional signature details are listed below:

image.parallel.plot
boolean; if true the image parallel coordinates plot will be implemented instead of default pairs plot; default value of FALSE
joint
boolean; if image.parallel.plot is TRUE, then this boolean establishes if the image parallel coordinates plot is joint or not
...
optional additional plot variables; See ImageParCoord or pairs.CSP for additional information on image parallel coordinates plotting and pairs contour-image plotting, respectively.
x="PRIM.step", y="missing"
Trajectory plot using the 'trajectory.pl' function in the rfcprim pacakge is displayed for the step.

x="PRIM.step.set", y="missing"
Trajectory plot using the 'trajectory.pl' function in the rfcprim is displayed for the peeling and the expansion steps.
x="PRIM.crossval.step", y="missing"
Trajectory plot using the 'trajectory.pl' function in the rfcprim is displayed for the peeling and the expansion steps for each testdata set.
x="PRIM.rule", y="missing"
Trajectory plots for all 3 steps is displayed.


[Package rflowcyt version 1.2.0 Index]