isProbeOnSpliceSite {splicegear} | R Documentation |
Return whether the probes are located on exons involved in (putative) alternative splicing or not.
isProbeOnSpliceSite(probes, spSites) ## isSpliceSiteOnProbe is not yet implemented
probes |
object of class Probes |
spSites |
object of class spliceSites |
The returned value in a list of two vectors of mode logical
of the same length:
isintypeI |
whether the probes are in a `type I' region or not. |
isintypeII |
whether the probe are in a `type II' region or not. |
Laurent
For details about `type I' and `type II', please refer to Huang Y.-H and Chen Y.-T and Lai J.-J. and Yang S.-T. and Yang U.-C., PALSdb: Putative Alternative Splicing database, Nucleic Acids Research, 2002, pages 186-190