twilight.permute.pair {twilight}R Documentation

A permutation matrix of paired class labels

Description

The function returns a matrix where each row is a (un)balanced permutation of the input twosample class labels.

Usage

twilight.permute.pair(v, m, bal = TRUE)

Arguments

v A binary vector representing class labels in original order. Pairs must be in the same order.
m A numerical value giving the number of permutations.
bal Logical value. Results in balanced or unbalanced permutations.

Value

Returns a matrix where each row contains one permuted vector of class labels. Note that even for balanced permutations, the first row always contains the original vector.

Author(s)

Stefanie Scheid http://www.molgen.mpg.de/~scheid

References

Scheid S and Spang R (2004): A stochastic downhill search algorithm for estimating the local false discovery rate, IEEE TCBB 1(3), 98–108.

See Also

twilight.permute.unpair, twilight.combi


[Package twilight version 1.4.0 Index]