maQualityPlots {arrayQuality} | R Documentation |
This function generates diagnostic plots for a qualitative assessment of slide quality.
maQualityPlots(mrawObj, headerInfo = "", save = TRUE, dev = "png", col=NULL, badspotfunction=NULL, controlId = c("ID", "Name"), DEBUG = FALSE, ...)
mrawObj |
marrayRaw or RGList object representing
the slides to be tested. |
headerInfo |
Text to be used as header in the diagnostic plot. |
save |
Logical. If 'TRUE', the plot is saved to a file. |
dev |
A "character" string naming the graphics device. This will take arguments "png", "jpeg" and "ps" only. By default, dev is set to "png". |
col |
Vector of colors to use to describe different categories of spots. |
badspotfunction |
Function to use for bad spots on the array. |
controlId |
Character string. Name of the column of the gpr file used to define controls (or provides the name of the probes). |
DEBUG |
If 'TRUE', debug statements are printed. |
... |
additional arguments |
Jean Yang
# Example uses swirl dataset...