12Mm250.gpr |
Example GPR files |
9Mm137.gpr |
Example GPR files |
agcontrolCode |
Diagnostic plots and comparative boxplots for general
hybridization, Agilent format |
agQuality |
Diagnostic plots and comparative boxplots for general
hybridization, Agilent format |
arrayControls |
Internal arrayQuality functions |
arrayReplicates |
Internal arrayQuality functions |
arrayScal |
Internal arrayQuality functions |
EMSplit |
Internal arrayQuality functions |
globalQuality |
Quality measures for general hybridization. |
gpFlagWt |
Internal arrayQuality functions |
gpQuality |
Diagnostic plots and comparative boxplots for general hybridization |
HsReferenceDB |
Reference slides for Mouse oligos hybridizations |
index.html |
Reference slides for Mouse oligos hybridizations |
maQualityPlots |
Qualitative diagnostic plot for general hybridization |
MmDEGenes |
Known DE genes for Mouse quality hybridizations. |
MmReferenceDB |
Reference slides for Mouse oligos hybridizations |
outputNormData |
Internal arrayQuality functions |
PRv9mers |
Print Run Quality version 9mers |
PRvQCHyb |
Print run Quality version Quality Control Hybridization |
qpDotPlots |
Internal arrayQuality functions |
qpHexbin |
Internal arrayQuality functions |
qpImage |
Internal arrayQuality functions |
qpMAPlots |
Internal arrayQuality functions |
qpPTLoess |
Internal arrayQuality functions |
qpS2N |
Internal arrayQuality functions |
qualBoxplot |
Comparative boxplot for general hybridization Quality Control |
quality2HTML |
Internal arrayQuality functions |
qualityScore |
Quality Control score for general hybridization |
readAgilent |
Extraction of measures from Agilent (.txt) files. |
readcontrolCode |
Control status information |
readGPR |
Reading GenePix gpr file |
readSpot |
Extraction of measures from Spot (.spot) files. |
replicatesAvariance |
Internal arrayQuality functions |
scaleRefTable |
General hybridization quality scaling |
setCtlCol |
Internal arrayQuality functions |
slideQuality |
Quality Control statistics for general hybridization |
spotQuality |
Diagnostic plots and comparative boxplots for general
hybridization, Spot format |