clusterStatisticHyper-class {goCluster} | R Documentation |
This class provides the hypergeometric distribution for goCluster and can be used to identify gene groups that show a significant enrichement of similar annotation terms.
The class provides a wrapper around the evalClusterHyper
function. Please read the corresponding documentation for further
details.
All slots are described in the documentation of the
clusterStatistic-class
and clusterModule-class
.
Class "clusterStatistic"
, directly.
Class "clusterModule"
, by class "clusterStatistic"
.
signature(object = "clusterStatisticHyper")
:
interactive setup of the class. There are no options that you can
set on this class.signature(object = "clusterStatisticHyper")
:
returns the configuration of the object as a list. Since there are
no options to this class, this is always an empty list. signature(object = "clusterStatisticHyper")
:
non-interactive setup of the class. Not necessary since this class
has no options.signature(object = "clusterStatisticHyper")
:
runs the statistical analysis on the clustering results provided
by the parent class. signature(object = "clusterStatisticHyper")
:
resets the results of this class so that the analysis can be run
again. signature(object = "clusterStatisticHyper")
:
This function prints some basic information about the content of
this object. If the object has been executed, it will show the
number clusters that have been analyzed. Gunnar Wrobel, work@gunnarwrobel.de, http://www.gunnarwrobel.de.
evalClusterHyper
,
goCluster-class
,
clusterModule-class
,
clusterStatistic-class