selectTerms {goCluster}R Documentation

A function to select interesting annotation terms with the associated genes from a goCluster object

Description

This function will retrieve the data for the given annotation terms from a goCluster-object.

Usage

selectTerms(goCluster, terms)

Arguments

goCluster An object of class goCluster with an object of class clusterVisualHeatmap as visualization method.
terms The annotation terms that should be returned.

Details

The heatmap visualization method will store the identified annotation terms in a tree that matches the clustering tree. The selectTerms-function facilitates the retrieval of specified annotation terms from this tree.

Value

A list of elements named according to the annotation terms.

Examples


set.seed(1000)

data(benomylsetupsmall)

benomylsetupsmall$classvisu <- "clusterVisualHeatmap"

a <- new("goCluster")

execute(a) <- benomylsetupsmall

selectTerms(a, "GO:0003735")

[Package goCluster version 1.4.0 Index]