Massvector-class {msbase}R Documentation

Class "Massvector"

Description

A concise (1-5 lines) description of what the class is.

Objects from the Class

Objects can be created by calls of the form new("Massvector", data, info, tcoor, gelcoor, access, pionm).

Slots

.Data:
Object of class "matrix". First column contains masses. Second can contain intesnities.
info:
Object of class "character", information field
tcoor:
Object of class "numeric", target coordinates
gelcoor:
Object of class "numeric", gel coordinates
access:
Object of class "character", accession string
pionm:
Object of class "numeric", parent ion mass
zvalue:
Object of class "numeric", Charge of the parent ion

Extends

Class "matrix", directly.

Methods

[
signature(x = "Massvector"): ...
coerce
signature(from = "Massvector", to = "array"): ...
coerce
signature(from = "Massvector", to = "list"): ...
coerce
signature(from = "Massvector", to = "data.frame"): ...
image
signature(x = "Massvector"): ...
initialize
signature(.Object = "Massvector"): ...
length
signature(x = "Massvector"): ...
mvmeannorm
signature(object = "Massvector"): ...
mvscale
signature(object = "Massvector"): see scale
plot
signature(x = "Massvector", y = "Massvector"): ...
pairplot
signature(x = "Massvector", y ="Massvector"): Head-To-Tail Plot
plot
signature(x = "Massvector", y = "missing"): ...
points
signature(x = "Massvector"): add stick spectrum to plot
readBruker
signature(object = "Massvector"): reads Bruker XML file
readMV
signature(object = "Massvector", src = "character"): reads Massvector from file
show
signature(object = "Massvector"):
summary
signature(object = "Massvector"):
writeMV
signature(object = "Massvector", path = "character"): writes Massvector to file
pep.plot
signature(x = "Massvector", y = "missing"): pep.plot

Note

Author(s)

Witold E. Wolski witek96@users.sourceforge.net

See Also

fdist-methods,fbinary-methods,fcor-methods, ,Massvectorlist-class,fintersect-methods,gamasses-methods ,finterS-methods,funion-methods,nrmatch-methods

Examples

data(pldata)
new("Massvector")
new("Massvector",matrix(1:20,ncol=2),info="dummy",tcoor=c(0,0),gelcoor=c(0,0))
pl1<-pldata[[1]]
pl2<-pldata[[2]]
pl1
plot(pl1)
image(pl1)
length(pl1)

[Package msbase version 1.4.0 Index]