confint.segmentation |
Compute Bai's confidence intervals for specified segmentations |
costMatrix |
Segmentation cost matrix |
findSegments |
Fit a piecewise constant curve to a sequence of numbers |
getAttributeField |
Extract the value of a certain field out of a character vector such as in the "attributes" column of a GFF table. |
isWithinInterval |
Test whether a vector of numbers is within a vector of intervals |
otherStrand |
Return the name of the opposite strand |
plot.segmentation |
Plot result of segmentation algorithm |
plotAlongChrom |
Plot the results of segmentation along a chromosomal region |
posMin |
Find the smallest positive number in a vector |
qualityReport |
Assess quality of normalized poly-A-RNA samples |
sampleStep |
Sampling of ascending numbers to ensure minimal spacing. |
scoreSegments |
Score segments |
yeastFeatures |
A data.frame with metadata about the features in SGD GFF files |