Analysis of tiling arrays


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Documentation for package `tilingArray' version 1.2.0

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confint.segmentation Compute Bai's confidence intervals for specified segmentations
costMatrix Segmentation cost matrix
findSegments Fit a piecewise constant curve to a sequence of numbers
getAttributeField Extract the value of a certain field out of a character vector such as in the "attributes" column of a GFF table.
isWithinInterval Test whether a vector of numbers is within a vector of intervals
otherStrand Return the name of the opposite strand
plot.segmentation Plot result of segmentation algorithm
plotAlongChrom Plot the results of segmentation along a chromosomal region
posMin Find the smallest positive number in a vector
qualityReport Assess quality of normalized poly-A-RNA samples
sampleStep Sampling of ascending numbers to ensure minimal spacing.
scoreSegments Score segments
yeastFeatures A data.frame with metadata about the features in SGD GFF files