scoreSegments {tilingArray} | R Documentation |
Score the segments found by a previous call to findSegments by comparing to genome annotation
scoreSegments(s, gff, nrBasePerSeg = 1500, probeLength = 25, params = c(overlapFraction = 0.5, oppositeWindow = 100, flankProbes=10), verbose = TRUE)
s |
environment. See details. |
gff |
GFF dataframe. |
nrBasePerSeg |
Numeric of length 1. This parameter determines the number of segments. |
probeLength |
Numeric of length 1. |
params |
vector of additional parameters, see details. |
verbose |
Logical. |
This function scores segments.
It is typically called after a segmentation.
For an example segmentation script, see the script segment.R
in the scripts
directory of this package. For an example
scoring script, which loads the data and then calls this function, see
the script scoreSegments.R
.
A dataframe with columns as described in the details section.
W. Huber <huber@ebi.ac.uk>