aGFF-class | Class for storing GFF-like data |
aGFFCalc-class | Class "aGFFCalc" |
do.aGFF.calc | Perform ACME calculation |
example.agff | An example ACME data structure of class aGFF |
findClosestGene | Find closest refseq gene |
findRegions | Find all regions in data above p-value threshold |
getRefflat | Get the refflat table from ucsc for the given genome |
plot,aGFF-method | Class for storing GFF-like data |
plot,aGFFCalc-method | Class "aGFFCalc" |
print,aGFF-method | Class for storing GFF-like data |
print,aGFFCalc-method | Class "aGFFCalc" |
read.resultsGFF | Read Nimblegen GFF files |
show,aGFF-method | Class for storing GFF-like data |
show,aGFFCalc-method | Class "aGFFCalc" |
write.sgr | Write Affy IGB .sgr format files |